miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12882 5' -62.8 NC_003387.1 + 119 1.07 0.000293
Target:  5'- gCGCCCGCCUCGAUGCGGUCGCCCUCGc -3'
miRNA:   3'- -GCGGGCGGAGCUACGCCAGCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 29425 0.67 0.30695
Target:  5'- aGgCCGCCgcagCGGcccgcGCGGUCGCuauCCUCGc -3'
miRNA:   3'- gCgGGCGGa---GCUa----CGCCAGCG---GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 23478 0.67 0.30695
Target:  5'- aCGaCCCGCCguUCGAgcgGCGGUucuggUGCCCg-- -3'
miRNA:   3'- -GC-GGGCGG--AGCUa--CGCCA-----GCGGGagc -5'
12882 5' -62.8 NC_003387.1 + 26842 0.66 0.376889
Target:  5'- gGCCUGCUcggCGAgcUGUGGaUGCaCCUCGg -3'
miRNA:   3'- gCGGGCGGa--GCU--ACGCCaGCG-GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 3342 0.7 0.187926
Target:  5'- gGCCCGCUcguUUGgcGCGGUCGUCgaCGg -3'
miRNA:   3'- gCGGGCGG---AGCuaCGCCAGCGGgaGC- -5'
12882 5' -62.8 NC_003387.1 + 41752 0.69 0.224135
Target:  5'- gGCUgGCCgCGGUGUGGUgCGaCCUCGa -3'
miRNA:   3'- gCGGgCGGaGCUACGCCA-GCgGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 25168 0.69 0.235519
Target:  5'- gGUUCGgCUCGgcGCGGUgGCCC-CGg -3'
miRNA:   3'- gCGGGCgGAGCuaCGCCAgCGGGaGC- -5'
12882 5' -62.8 NC_003387.1 + 34504 0.69 0.235519
Target:  5'- aCGCCCGCCgc--UGCGG-CGCcgcgauCCUCGg -3'
miRNA:   3'- -GCGGGCGGagcuACGCCaGCG------GGAGC- -5'
12882 5' -62.8 NC_003387.1 + 43709 0.68 0.266103
Target:  5'- gCGCCCGCCaggugcUCGAcggcggcaUGCGGgaGCCCgCGa -3'
miRNA:   3'- -GCGGGCGG------AGCU--------ACGCCagCGGGaGC- -5'
12882 5' -62.8 NC_003387.1 + 20751 0.67 0.299822
Target:  5'- -aCCUGUgCUCGAUGCGccugcaaggcgcGUCgGCCCUCGg -3'
miRNA:   3'- gcGGGCG-GAGCUACGC------------CAG-CGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 28891 0.68 0.272592
Target:  5'- gCGCCgaGUCcCGgcGCGG-CGCCCUCa -3'
miRNA:   3'- -GCGGg-CGGaGCuaCGCCaGCGGGAGc -5'
12882 5' -62.8 NC_003387.1 + 4478 0.68 0.253499
Target:  5'- aGCCCGCCgcgaaggcCGAgcccGCGGagGCCCcgcUCGa -3'
miRNA:   3'- gCGGGCGGa-------GCUa---CGCCagCGGG---AGC- -5'
12882 5' -62.8 NC_003387.1 + 47167 0.72 0.130692
Target:  5'- gGCaCCGCggUGGcccugGUGGUCGCCCUCGg -3'
miRNA:   3'- gCG-GGCGgaGCUa----CGCCAGCGGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 10684 0.68 0.279208
Target:  5'- aCGgCCGCCUCGGcgGUGGcCGCCgguaUCa -3'
miRNA:   3'- -GCgGGCGGAGCUa-CGCCaGCGGg---AGc -5'
12882 5' -62.8 NC_003387.1 + 48305 0.71 0.169627
Target:  5'- cCGCCCGCCUCGAcgaaaucgagGCGG-CGCgCgagCGc -3'
miRNA:   3'- -GCGGGCGGAGCUa---------CGCCaGCGgGa--GC- -5'
12882 5' -62.8 NC_003387.1 + 6384 0.69 0.24139
Target:  5'- aGCCCGCCUCG-UG-GGUUuCCC-CGg -3'
miRNA:   3'- gCGGGCGGAGCuACgCCAGcGGGaGC- -5'
12882 5' -62.8 NC_003387.1 + 47210 0.68 0.279208
Target:  5'- cCGCCgGUgUCGGcauUGUGGUgGgCCUCGg -3'
miRNA:   3'- -GCGGgCGgAGCU---ACGCCAgCgGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 49580 0.67 0.30695
Target:  5'- gCGCCCGCUgcCGG-GCGGUgGCCUg-- -3'
miRNA:   3'- -GCGGGCGGa-GCUaCGCCAgCGGGagc -5'
12882 5' -62.8 NC_003387.1 + 44763 0.71 0.178569
Target:  5'- cCGCCCGCCgUGAaGCGGccCGaCCUCGa -3'
miRNA:   3'- -GCGGGCGGaGCUaCGCCa-GCgGGAGC- -5'
12882 5' -62.8 NC_003387.1 + 24871 0.69 0.229768
Target:  5'- gGCUCGaCCUCGG-GCGGUggcugCGCCCUg- -3'
miRNA:   3'- gCGGGC-GGAGCUaCGCCA-----GCGGGAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.