miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12894 5' -53.9 NC_003387.1 + 16967 0.68 0.669039
Target:  5'- uGCUGGCGUUUCACcugGCGCgGGcGGgcugCGu -3'
miRNA:   3'- cCGACUGUAAAGUG---CGCGgCU-CCa---GC- -5'
12894 5' -53.9 NC_003387.1 + 17334 0.69 0.602783
Target:  5'- cGgUGGCGcUUCuGCGUGCCGcaAGGUCGg -3'
miRNA:   3'- cCgACUGUaAAG-UGCGCGGC--UCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 18026 0.66 0.804941
Target:  5'- cGGCUGuACA----GCGUGcCCGAGG-CGg -3'
miRNA:   3'- -CCGAC-UGUaaagUGCGC-GGCUCCaGC- -5'
12894 5' -53.9 NC_003387.1 + 18472 0.68 0.701835
Target:  5'- cGGUUGaACAgg-UAgGCGCCGAGGa-- -3'
miRNA:   3'- -CCGAC-UGUaaaGUgCGCGGCUCCagc -5'
12894 5' -53.9 NC_003387.1 + 21468 0.66 0.795268
Target:  5'- cGCUGGCGcagCcCGCGCC--GGUCGg -3'
miRNA:   3'- cCGACUGUaaaGuGCGCGGcuCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 22579 0.72 0.432
Target:  5'- cGGCgGGCAUgauccaUUCGCGCcaguuggccgggucGUCGGGGUCGg -3'
miRNA:   3'- -CCGaCUGUA------AAGUGCG--------------CGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 22931 0.66 0.765261
Target:  5'- aGGCUGAUcaGUgcgccUUGCGCGCCGAucGcGUUGg -3'
miRNA:   3'- -CCGACUG--UAa----AGUGCGCGGCU--C-CAGC- -5'
12894 5' -53.9 NC_003387.1 + 22972 0.7 0.579702
Target:  5'- cGUUGGCcg-UCGCGUcggucuuGCCGGGGUCa -3'
miRNA:   3'- cCGACUGuaaAGUGCG-------CGGCUCCAGc -5'
12894 5' -53.9 NC_003387.1 + 23892 0.76 0.26865
Target:  5'- uGGCcGACGUgcUGCGCGCCGAGGg-- -3'
miRNA:   3'- -CCGaCUGUAaaGUGCGCGGCUCCagc -5'
12894 5' -53.9 NC_003387.1 + 24653 0.66 0.814431
Target:  5'- uGCUGcGCGaggUCGCcaGCGCCGAGGg-- -3'
miRNA:   3'- cCGAC-UGUaa-AGUG--CGCGGCUCCagc -5'
12894 5' -53.9 NC_003387.1 + 26821 0.68 0.658023
Target:  5'- cGCUGGgggUAUgcCGCuCGCCGGGGUCGc -3'
miRNA:   3'- cCGACU---GUAaaGUGcGCGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 27239 0.7 0.569865
Target:  5'- aGCUGACA---CGCGCgGUCGAGG-CGg -3'
miRNA:   3'- cCGACUGUaaaGUGCG-CGGCUCCaGC- -5'
12894 5' -53.9 NC_003387.1 + 27418 0.71 0.526724
Target:  5'- cGCUGGCAc--CAcCGCGCCGAcGUCGc -3'
miRNA:   3'- cCGACUGUaaaGU-GCGCGGCUcCAGC- -5'
12894 5' -53.9 NC_003387.1 + 27785 0.75 0.312504
Target:  5'- cGGCUGAUAUgcaGCGgccUGUCGGGGUCGg -3'
miRNA:   3'- -CCGACUGUAaagUGC---GCGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 27957 0.66 0.771372
Target:  5'- cGGCUGGCcgggcuccugcUCGacCGCGCCGGuGUCGa -3'
miRNA:   3'- -CCGACUGuaa--------AGU--GCGCGGCUcCAGC- -5'
12894 5' -53.9 NC_003387.1 + 28931 0.67 0.734012
Target:  5'- cGGC-GGCGaggUUCACGC-CUGAGuGUCGu -3'
miRNA:   3'- -CCGaCUGUa--AAGUGCGcGGCUC-CAGC- -5'
12894 5' -53.9 NC_003387.1 + 29434 0.69 0.602783
Target:  5'- cGCUGACgg-UCAgGuCGCCGAGGa-- -3'
miRNA:   3'- cCGACUGuaaAGUgC-GCGGCUCCagc -5'
12894 5' -53.9 NC_003387.1 + 29677 0.71 0.505608
Target:  5'- cGCcGACGUcgacgUCgACGUgGCCGAGGUCGa -3'
miRNA:   3'- cCGaCUGUAa----AG-UGCG-CGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 30215 0.7 0.558983
Target:  5'- cGCcGACGUcgagCGCGcCGCCGAGGcCGu -3'
miRNA:   3'- cCGaCUGUAaa--GUGC-GCGGCUCCaGC- -5'
12894 5' -53.9 NC_003387.1 + 32116 0.66 0.775417
Target:  5'- gGGCUGACGcaaugcaacUCAUGCGCCacaucGAGGa-- -3'
miRNA:   3'- -CCGACUGUaa-------AGUGCGCGG-----CUCCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.