Results 1 - 20 of 55 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 891 | 0.71 | 0.526724 |
Target: 5'- aGGCcGuCGUcgcgcUUCGCGCaaaucagcuuGCCGAGGUCGu -3' miRNA: 3'- -CCGaCuGUA-----AAGUGCG----------CGGCUCCAGC- -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 1647 | 0.71 | 0.509803 |
Target: 5'- cGCcagGGCGUUagGCGCuucgccguccucgggGCCGAGGUCGa -3' miRNA: 3'- cCGa--CUGUAAagUGCG---------------CGGCUCCAGC- -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 2261 | 0.66 | 0.814431 |
Target: 5'- gGGCUG-CGUgg-GCGCcCCGAGGUg- -3' miRNA: 3'- -CCGACuGUAaagUGCGcGGCUCCAgc -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 3023 | 0.71 | 0.495187 |
Target: 5'- cGCUGA----UCACGCGCUGcGGGUUGg -3' miRNA: 3'- cCGACUguaaAGUGCGCGGC-UCCAGC- -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 3299 | 0.67 | 0.723374 |
Target: 5'- cGGCcgccGAC---UCGgGCGCCGAGGUg- -3' miRNA: 3'- -CCGa---CUGuaaAGUgCGCGGCUCCAgc -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 4181 | 0.69 | 0.602783 |
Target: 5'- cGGCcGACuuguaCACgGCGCCGcGGGUCGc -3' miRNA: 3'- -CCGaCUGuaaa-GUG-CGCGGC-UCCAGC- -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 5933 | 0.68 | 0.680021 |
Target: 5'- gGGCUGACAacaggUUUC-CGCG-CGAGGa-- -3' miRNA: 3'- -CCGACUGU-----AAAGuGCGCgGCUCCagc -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 5994 | 1.1 | 0.001202 |
Target: 5'- uGGCUGACAUUUCACGCGCCGAGGUCGc -3' miRNA: 3'- -CCGACUGUAAAGUGCGCGGCUCCAGC- -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 6041 | 0.67 | 0.744547 |
Target: 5'- uGGCUuuCuccUUUCuCcCGCCGAGGUCGg -3' miRNA: 3'- -CCGAcuGu--AAAGuGcGCGGCUCCAGC- -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 6543 | 0.67 | 0.753931 |
Target: 5'- uGCUGuCGUccCugGCGCugcguuaCGAGGUCGc -3' miRNA: 3'- cCGACuGUAaaGugCGCG-------GCUCCAGC- -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 7281 | 0.71 | 0.49415 |
Target: 5'- cGGCgUGACG-UUCACGCccggcgguaacucGCCGGGGcCGu -3' miRNA: 3'- -CCG-ACUGUaAAGUGCG-------------CGGCUCCaGC- -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 7758 | 0.68 | 0.669039 |
Target: 5'- cGGCgUGAacccgaACGgGCCGAGGUUGu -3' miRNA: 3'- -CCG-ACUguaaagUGCgCGGCUCCAGC- -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 7811 | 0.7 | 0.580797 |
Target: 5'- aGCUG-CAacgcCugGCgGCCGAGGUCGc -3' miRNA: 3'- cCGACuGUaaa-GugCG-CGGCUCCAGC- -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 10019 | 0.67 | 0.709409 |
Target: 5'- gGGCgacGACGacgacgagccgaaGCGCGCCGAGGgcgCGg -3' miRNA: 3'- -CCGa--CUGUaaag---------UGCGCGGCUCCa--GC- -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 10442 | 0.7 | 0.548161 |
Target: 5'- cGGCgGGCAUcgacaGCGCGCUGucGGUCGc -3' miRNA: 3'- -CCGaCUGUAaag--UGCGCGGCu-CCAGC- -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 10742 | 0.67 | 0.712645 |
Target: 5'- cGGCcGugGUcgCAgcCGCGUCGAGGcCGa -3' miRNA: 3'- -CCGaCugUAaaGU--GCGCGGCUCCaGC- -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 12432 | 0.68 | 0.701835 |
Target: 5'- aGCUGAUuagg-GCGCuGCCGAGGUUc -3' miRNA: 3'- cCGACUGuaaagUGCG-CGGCUCCAGc -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 14895 | 0.72 | 0.434903 |
Target: 5'- cGGUcGugAUcgUGCGCGCCGuGGGUCGg -3' miRNA: 3'- -CCGaCugUAaaGUGCGCGGC-UCCAGC- -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 15815 | 0.69 | 0.635927 |
Target: 5'- gGGCUGACGcg-CACaGCGucaCCGAGG-CGa -3' miRNA: 3'- -CCGACUGUaaaGUG-CGC---GGCUCCaGC- -5' |
|||||||
12894 | 5' | -53.9 | NC_003387.1 | + | 16687 | 0.73 | 0.397155 |
Target: 5'- gGGCg-------CGCGUGCCGAGGUCGa -3' miRNA: 3'- -CCGacuguaaaGUGCGCGGCUCCAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home