miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12894 5' -53.9 NC_003387.1 + 5994 1.1 0.001202
Target:  5'- uGGCUGACAUUUCACGCGCCGAGGUCGc -3'
miRNA:   3'- -CCGACUGUAAAGUGCGCGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 12432 0.68 0.701835
Target:  5'- aGCUGAUuagg-GCGCuGCCGAGGUUc -3'
miRNA:   3'- cCGACUGuaaagUGCG-CGGCUCCAGc -5'
12894 5' -53.9 NC_003387.1 + 3299 0.67 0.723374
Target:  5'- cGGCcgccGAC---UCGgGCGCCGAGGUg- -3'
miRNA:   3'- -CCGa---CUGuaaAGUgCGCGGCUCCAgc -5'
12894 5' -53.9 NC_003387.1 + 24653 0.66 0.814431
Target:  5'- uGCUGcGCGaggUCGCcaGCGCCGAGGg-- -3'
miRNA:   3'- cCGAC-UGUaa-AGUG--CGCGGCUCCagc -5'
12894 5' -53.9 NC_003387.1 + 29677 0.71 0.505608
Target:  5'- cGCcGACGUcgacgUCgACGUgGCCGAGGUCGa -3'
miRNA:   3'- cCGaCUGUAa----AG-UGCG-CGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 27418 0.71 0.526724
Target:  5'- cGCUGGCAc--CAcCGCGCCGAcGUCGc -3'
miRNA:   3'- cCGACUGUaaaGU-GCGCGGCUcCAGC- -5'
12894 5' -53.9 NC_003387.1 + 35386 0.7 0.558983
Target:  5'- cGcCUGGCAUgcgUUCACGCugGCCGAGuucGUCGa -3'
miRNA:   3'- cC-GACUGUA---AAGUGCG--CGGCUC---CAGC- -5'
12894 5' -53.9 NC_003387.1 + 30215 0.7 0.558983
Target:  5'- cGCcGACGUcgagCGCGcCGCCGAGGcCGu -3'
miRNA:   3'- cCGaCUGUAaa--GUGC-GCGGCUCCaGC- -5'
12894 5' -53.9 NC_003387.1 + 17334 0.69 0.602783
Target:  5'- cGgUGGCGcUUCuGCGUGCCGcaAGGUCGg -3'
miRNA:   3'- cCgACUGUaAAG-UGCGCGGC--UCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 35680 0.68 0.680021
Target:  5'- uGGCUGAgCGgg-CACGUGUgGGGGcCGu -3'
miRNA:   3'- -CCGACU-GUaaaGUGCGCGgCUCCaGC- -5'
12894 5' -53.9 NC_003387.1 + 15815 0.69 0.635927
Target:  5'- gGGCUGACGcg-CACaGCGucaCCGAGG-CGa -3'
miRNA:   3'- -CCGACUGUaaaGUG-CGC---GGCUCCaGC- -5'
12894 5' -53.9 NC_003387.1 + 7811 0.7 0.580797
Target:  5'- aGCUG-CAacgcCugGCgGCCGAGGUCGc -3'
miRNA:   3'- cCGACuGUaaa-GugCG-CGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 23892 0.76 0.26865
Target:  5'- uGGCcGACGUgcUGCGCGCCGAGGg-- -3'
miRNA:   3'- -CCGaCUGUAaaGUGCGCGGCUCCagc -5'
12894 5' -53.9 NC_003387.1 + 16967 0.68 0.669039
Target:  5'- uGCUGGCGUUUCACcugGCGCgGGcGGgcugCGu -3'
miRNA:   3'- cCGACUGUAAAGUG---CGCGgCU-CCa---GC- -5'
12894 5' -53.9 NC_003387.1 + 48524 0.73 0.39441
Target:  5'- gGGCcGACAcgcgguggccgaagCAcCGCGCCGAGGUCa -3'
miRNA:   3'- -CCGaCUGUaaa-----------GU-GCGCGGCUCCAGc -5'
12894 5' -53.9 NC_003387.1 + 27239 0.7 0.569865
Target:  5'- aGCUGACA---CGCGCgGUCGAGG-CGg -3'
miRNA:   3'- cCGACUGUaaaGUGCG-CGGCUCCaGC- -5'
12894 5' -53.9 NC_003387.1 + 5933 0.68 0.680021
Target:  5'- gGGCUGACAacaggUUUC-CGCG-CGAGGa-- -3'
miRNA:   3'- -CCGACUGU-----AAAGuGCGCgGCUCCagc -5'
12894 5' -53.9 NC_003387.1 + 10019 0.67 0.709409
Target:  5'- gGGCgacGACGacgacgagccgaaGCGCGCCGAGGgcgCGg -3'
miRNA:   3'- -CCGa--CUGUaaag---------UGCGCGGCUCCa--GC- -5'
12894 5' -53.9 NC_003387.1 + 7281 0.71 0.49415
Target:  5'- cGGCgUGACG-UUCACGCccggcgguaacucGCCGGGGcCGu -3'
miRNA:   3'- -CCG-ACUGUaAAGUGCG-------------CGGCUCCaGC- -5'
12894 5' -53.9 NC_003387.1 + 10442 0.7 0.548161
Target:  5'- cGGCgGGCAUcgacaGCGCGCUGucGGUCGc -3'
miRNA:   3'- -CCGaCUGUAaag--UGCGCGGCu-CCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.