miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12894 5' -53.9 NC_003387.1 + 5994 1.1 0.001202
Target:  5'- uGGCUGACAUUUCACGCGCCGAGGUCGc -3'
miRNA:   3'- -CCGACUGUAAAGUGCGCGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 50546 0.76 0.24865
Target:  5'- uGCcGACGaccUCGCGgGCCGGGGUCGg -3'
miRNA:   3'- cCGaCUGUaa-AGUGCgCGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 23892 0.76 0.26865
Target:  5'- uGGCcGACGUgcUGCGCGCCGAGGg-- -3'
miRNA:   3'- -CCGaCUGUAaaGUGCGCGGCUCCagc -5'
12894 5' -53.9 NC_003387.1 + 27785 0.75 0.312504
Target:  5'- cGGCUGAUAUgcaGCGgccUGUCGGGGUCGg -3'
miRNA:   3'- -CCGACUGUAaagUGC---GCGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 32570 0.73 0.388052
Target:  5'- cGGCaGuCGUcgCACcacgGCGCCGGGGUCGa -3'
miRNA:   3'- -CCGaCuGUAaaGUG----CGCGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 48524 0.73 0.39441
Target:  5'- gGGCcGACAcgcgguggccgaagCAcCGCGCCGAGGUCa -3'
miRNA:   3'- -CCGaCUGUaaa-----------GU-GCGCGGCUCCAGc -5'
12894 5' -53.9 NC_003387.1 + 16687 0.73 0.397155
Target:  5'- gGGCg-------CGCGUGCCGAGGUCGa -3'
miRNA:   3'- -CCGacuguaaaGUGCGCGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 22579 0.72 0.432
Target:  5'- cGGCgGGCAUgauccaUUCGCGCcaguuggccgggucGUCGGGGUCGg -3'
miRNA:   3'- -CCGaCUGUA------AAGUGCG--------------CGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 14895 0.72 0.434903
Target:  5'- cGGUcGugAUcgUGCGCGCCGuGGGUCGg -3'
miRNA:   3'- -CCGaCugUAaaGUGCGCGGC-UCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 49190 0.72 0.434903
Target:  5'- cGGgUGACAgcgggUGCGCGUCGAGGUg- -3'
miRNA:   3'- -CCgACUGUaaa--GUGCGCGGCUCCAgc -5'
12894 5' -53.9 NC_003387.1 + 7281 0.71 0.49415
Target:  5'- cGGCgUGACG-UUCACGCccggcgguaacucGCCGGGGcCGu -3'
miRNA:   3'- -CCG-ACUGUaAAGUGCG-------------CGGCUCCaGC- -5'
12894 5' -53.9 NC_003387.1 + 3023 0.71 0.495187
Target:  5'- cGCUGA----UCACGCGCUGcGGGUUGg -3'
miRNA:   3'- cCGACUguaaAGUGCGCGGC-UCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 29677 0.71 0.505608
Target:  5'- cGCcGACGUcgacgUCgACGUgGCCGAGGUCGa -3'
miRNA:   3'- cCGaCUGUAa----AG-UGCG-CGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 1647 0.71 0.509803
Target:  5'- cGCcagGGCGUUagGCGCuucgccguccucgggGCCGAGGUCGa -3'
miRNA:   3'- cCGa--CUGUAAagUGCG---------------CGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 891 0.71 0.526724
Target:  5'- aGGCcGuCGUcgcgcUUCGCGCaaaucagcuuGCCGAGGUCGu -3'
miRNA:   3'- -CCGaCuGUA-----AAGUGCG----------CGGCUCCAGC- -5'
12894 5' -53.9 NC_003387.1 + 27418 0.71 0.526724
Target:  5'- cGCUGGCAc--CAcCGCGCCGAcGUCGc -3'
miRNA:   3'- cCGACUGUaaaGU-GCGCGGCUcCAGC- -5'
12894 5' -53.9 NC_003387.1 + 10442 0.7 0.548161
Target:  5'- cGGCgGGCAUcgacaGCGCGCUGucGGUCGc -3'
miRNA:   3'- -CCGaCUGUAaag--UGCGCGGCu-CCAGC- -5'
12894 5' -53.9 NC_003387.1 + 30215 0.7 0.558983
Target:  5'- cGCcGACGUcgagCGCGcCGCCGAGGcCGu -3'
miRNA:   3'- cCGaCUGUAaa--GUGC-GCGGCUCCaGC- -5'
12894 5' -53.9 NC_003387.1 + 35386 0.7 0.558983
Target:  5'- cGcCUGGCAUgcgUUCACGCugGCCGAGuucGUCGa -3'
miRNA:   3'- cC-GACUGUA---AAGUGCG--CGGCUC---CAGC- -5'
12894 5' -53.9 NC_003387.1 + 27239 0.7 0.569865
Target:  5'- aGCUGACA---CGCGCgGUCGAGG-CGg -3'
miRNA:   3'- cCGACUGUaaaGUGCG-CGGCUCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.