miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1290 5' -55.5 NC_001317.1 + 19822 0.66 0.506183
Target:  5'- -gACCAguCGCAGGAGUccgacgccguauuUCugacccgacuggcugACCGCAAUGg -3'
miRNA:   3'- agUGGU--GCGUCCUCG-------------AG---------------UGGCGUUAC- -5'
1290 5' -55.5 NC_001317.1 + 17592 0.66 0.492028
Target:  5'- -gGCCAUuaAGGAGCUCGgCGuCAAa- -3'
miRNA:   3'- agUGGUGcgUCCUCGAGUgGC-GUUac -5'
1290 5' -55.5 NC_001317.1 + 15589 0.66 0.492028
Target:  5'- -uGCCGCGcCGGGGGCUgaUGCCGUg--- -3'
miRNA:   3'- agUGGUGC-GUCCUCGA--GUGGCGuuac -5'
1290 5' -55.5 NC_001317.1 + 9728 0.67 0.460091
Target:  5'- gUUAuCCACGauaCAGGAGCUCGCgcgUGCGAUu -3'
miRNA:   3'- -AGU-GGUGC---GUCCUCGAGUG---GCGUUAc -5'
1290 5' -55.5 NC_001317.1 + 16140 0.68 0.380766
Target:  5'- aCGCCGCGCAGGGuGC-CugCGUu--- -3'
miRNA:   3'- aGUGGUGCGUCCU-CGaGugGCGuuac -5'
1290 5' -55.5 NC_001317.1 + 2405 0.68 0.371511
Target:  5'- uUUGCCGCGCAGGcAGauggCAuCCGCAAa- -3'
miRNA:   3'- -AGUGGUGCGUCC-UCga--GU-GGCGUUac -5'
1290 5' -55.5 NC_001317.1 + 6279 0.68 0.40944
Target:  5'- cUUGCCGCGCAGc-GC-CugCGCGAUGc -3'
miRNA:   3'- -AGUGGUGCGUCcuCGaGugGCGUUAC- -5'
1290 5' -55.5 NC_001317.1 + 4075 0.69 0.357024
Target:  5'- -gGCCGCGCAGGuGUUCaagguugauacggcaACCGUAAa- -3'
miRNA:   3'- agUGGUGCGUCCuCGAG---------------UGGCGUUac -5'
1290 5' -55.5 NC_001317.1 + 6454 0.7 0.295286
Target:  5'- uUCAgCGCGCGauGcAGCUCgACCGCAAUGc -3'
miRNA:   3'- -AGUgGUGCGU--CcUCGAG-UGGCGUUAC- -5'
1290 5' -55.5 NC_001317.1 + 24633 0.7 0.280092
Target:  5'- uUCGCgGCGCAGuAGCUCgGCCGCu--- -3'
miRNA:   3'- -AGUGgUGCGUCcUCGAG-UGGCGuuac -5'
1290 5' -55.5 NC_001317.1 + 5401 0.71 0.244836
Target:  5'- aUCACaCGCGCcGGGGCuUCAUUGCGGUa -3'
miRNA:   3'- -AGUG-GUGCGuCCUCG-AGUGGCGUUAc -5'
1290 5' -55.5 NC_001317.1 + 9799 0.72 0.225503
Target:  5'- aUACCGUGCAGGGGCUgUGCCGCGu-- -3'
miRNA:   3'- aGUGGUGCGUCCUCGA-GUGGCGUuac -5'
1290 5' -55.5 NC_001317.1 + 3302 0.72 0.201754
Target:  5'- gUACCGCGCAGGAcugGCaCACCGUAu-- -3'
miRNA:   3'- aGUGGUGCGUCCU---CGaGUGGCGUuac -5'
1290 5' -55.5 NC_001317.1 + 2808 0.72 0.20748
Target:  5'- gUCACCGCGCGcucgccgguGGccAGCUCugCGaCGAUGg -3'
miRNA:   3'- -AGUGGUGCGU---------CC--UCGAGugGC-GUUAC- -5'
1290 5' -55.5 NC_001317.1 + 6334 0.72 0.213345
Target:  5'- gCAUCGCGCAGGcGCUgCGCgGCAAg- -3'
miRNA:   3'- aGUGGUGCGUCCuCGA-GUGgCGUUac -5'
1290 5' -55.5 NC_001317.1 + 18428 0.74 0.156164
Target:  5'- -aGCCACGCAGGAaacGCUCgauaGCUGCAAa- -3'
miRNA:   3'- agUGGUGCGUCCU---CGAG----UGGCGUUac -5'
1290 5' -55.5 NC_001317.1 + 15034 0.77 0.103567
Target:  5'- -aACCGCGCAGGuGCUgGCCGacaCAAUGg -3'
miRNA:   3'- agUGGUGCGUCCuCGAgUGGC---GUUAC- -5'
1290 5' -55.5 NC_001317.1 + 16184 1.09 0.000381
Target:  5'- cUCACCACGCAGGAGCUCACCGCAAUGa -3'
miRNA:   3'- -AGUGGUGCGUCCUCGAGUGGCGUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.