Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1290 | 5' | -55.5 | NC_001317.1 | + | 16184 | 1.09 | 0.000381 |
Target: 5'- cUCACCACGCAGGAGCUCACCGCAAUGa -3' miRNA: 3'- -AGUGGUGCGUCCUCGAGUGGCGUUAC- -5' |
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1290 | 5' | -55.5 | NC_001317.1 | + | 15034 | 0.77 | 0.103567 |
Target: 5'- -aACCGCGCAGGuGCUgGCCGacaCAAUGg -3' miRNA: 3'- agUGGUGCGUCCuCGAgUGGC---GUUAC- -5' |
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1290 | 5' | -55.5 | NC_001317.1 | + | 18428 | 0.74 | 0.156164 |
Target: 5'- -aGCCACGCAGGAaacGCUCgauaGCUGCAAa- -3' miRNA: 3'- agUGGUGCGUCCU---CGAG----UGGCGUUac -5' |
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1290 | 5' | -55.5 | NC_001317.1 | + | 3302 | 0.72 | 0.201754 |
Target: 5'- gUACCGCGCAGGAcugGCaCACCGUAu-- -3' miRNA: 3'- aGUGGUGCGUCCU---CGaGUGGCGUuac -5' |
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1290 | 5' | -55.5 | NC_001317.1 | + | 2808 | 0.72 | 0.20748 |
Target: 5'- gUCACCGCGCGcucgccgguGGccAGCUCugCGaCGAUGg -3' miRNA: 3'- -AGUGGUGCGU---------CC--UCGAGugGC-GUUAC- -5' |
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1290 | 5' | -55.5 | NC_001317.1 | + | 6334 | 0.72 | 0.213345 |
Target: 5'- gCAUCGCGCAGGcGCUgCGCgGCAAg- -3' miRNA: 3'- aGUGGUGCGUCCuCGA-GUGgCGUUac -5' |
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1290 | 5' | -55.5 | NC_001317.1 | + | 9799 | 0.72 | 0.225503 |
Target: 5'- aUACCGUGCAGGGGCUgUGCCGCGu-- -3' miRNA: 3'- aGUGGUGCGUCCUCGA-GUGGCGUuac -5' |
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1290 | 5' | -55.5 | NC_001317.1 | + | 5401 | 0.71 | 0.244836 |
Target: 5'- aUCACaCGCGCcGGGGCuUCAUUGCGGUa -3' miRNA: 3'- -AGUG-GUGCGuCCUCG-AGUGGCGUUAc -5' |
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1290 | 5' | -55.5 | NC_001317.1 | + | 24633 | 0.7 | 0.280092 |
Target: 5'- uUCGCgGCGCAGuAGCUCgGCCGCu--- -3' miRNA: 3'- -AGUGgUGCGUCcUCGAG-UGGCGuuac -5' |
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1290 | 5' | -55.5 | NC_001317.1 | + | 6454 | 0.7 | 0.295286 |
Target: 5'- uUCAgCGCGCGauGcAGCUCgACCGCAAUGc -3' miRNA: 3'- -AGUgGUGCGU--CcUCGAG-UGGCGUUAC- -5' |
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1290 | 5' | -55.5 | NC_001317.1 | + | 4075 | 0.69 | 0.357024 |
Target: 5'- -gGCCGCGCAGGuGUUCaagguugauacggcaACCGUAAa- -3' miRNA: 3'- agUGGUGCGUCCuCGAG---------------UGGCGUUac -5' |
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1290 | 5' | -55.5 | NC_001317.1 | + | 2405 | 0.68 | 0.371511 |
Target: 5'- uUUGCCGCGCAGGcAGauggCAuCCGCAAa- -3' miRNA: 3'- -AGUGGUGCGUCC-UCga--GU-GGCGUUac -5' |
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1290 | 5' | -55.5 | NC_001317.1 | + | 16140 | 0.68 | 0.380766 |
Target: 5'- aCGCCGCGCAGGGuGC-CugCGUu--- -3' miRNA: 3'- aGUGGUGCGUCCU-CGaGugGCGuuac -5' |
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1290 | 5' | -55.5 | NC_001317.1 | + | 6279 | 0.68 | 0.40944 |
Target: 5'- cUUGCCGCGCAGc-GC-CugCGCGAUGc -3' miRNA: 3'- -AGUGGUGCGUCcuCGaGugGCGUUAC- -5' |
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1290 | 5' | -55.5 | NC_001317.1 | + | 9728 | 0.67 | 0.460091 |
Target: 5'- gUUAuCCACGauaCAGGAGCUCGCgcgUGCGAUu -3' miRNA: 3'- -AGU-GGUGC---GUCCUCGAGUG---GCGUUAc -5' |
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1290 | 5' | -55.5 | NC_001317.1 | + | 17592 | 0.66 | 0.492028 |
Target: 5'- -gGCCAUuaAGGAGCUCGgCGuCAAa- -3' miRNA: 3'- agUGGUGcgUCCUCGAGUgGC-GUUac -5' |
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1290 | 5' | -55.5 | NC_001317.1 | + | 15589 | 0.66 | 0.492028 |
Target: 5'- -uGCCGCGcCGGGGGCUgaUGCCGUg--- -3' miRNA: 3'- agUGGUGC-GUCCUCGA--GUGGCGuuac -5' |
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1290 | 5' | -55.5 | NC_001317.1 | + | 19822 | 0.66 | 0.506183 |
Target: 5'- -gACCAguCGCAGGAGUccgacgccguauuUCugacccgacuggcugACCGCAAUGg -3' miRNA: 3'- agUGGU--GCGUCCUCG-------------AG---------------UGGCGUUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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