miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12901 3' -60.8 NC_003387.1 + 528 0.67 0.36275
Target:  5'- gCCGUcGGCCgccGCGGCGGCGa-CAGa- -3'
miRNA:   3'- -GGCGaCUGGa--CGCCGCCGCggGUUaa -5'
12901 3' -60.8 NC_003387.1 + 710 0.68 0.300063
Target:  5'- gUCGCUG-CC-GCGGCGGCgacgcuGCCCu--- -3'
miRNA:   3'- -GGCGACuGGaCGCCGCCG------CGGGuuaa -5'
12901 3' -60.8 NC_003387.1 + 1229 0.66 0.379778
Target:  5'- cCCGCUGAuCCUGCuGGCcGGUacGCCa---- -3'
miRNA:   3'- -GGCGACU-GGACG-CCG-CCG--CGGguuaa -5'
12901 3' -60.8 NC_003387.1 + 1743 0.69 0.240542
Target:  5'- gUGCUGAUCgacagcaugagcccgGCGGCggcgcuGGCGCCCGAg- -3'
miRNA:   3'- gGCGACUGGa--------------CGCCG------CCGCGGGUUaa -5'
12901 3' -60.8 NC_003387.1 + 2053 0.77 0.067226
Target:  5'- -aGCUGGCCgcgGUGGCGGCGCCa---- -3'
miRNA:   3'- ggCGACUGGa--CGCCGCCGCGGguuaa -5'
12901 3' -60.8 NC_003387.1 + 3025 0.71 0.190203
Target:  5'- cCCGCUGAUcacgcgCUGCGGguUGGCGCCgAAc- -3'
miRNA:   3'- -GGCGACUG------GACGCC--GCCGCGGgUUaa -5'
12901 3' -60.8 NC_003387.1 + 3380 0.66 0.388491
Target:  5'- -aGCUGGCCU-CGGCGGgcauCCCGAUc -3'
miRNA:   3'- ggCGACUGGAcGCCGCCgc--GGGUUAa -5'
12901 3' -60.8 NC_003387.1 + 3725 0.67 0.354437
Target:  5'- gCGCUGAucgacccguaCCUGuCGGCGuCGUCCAAg- -3'
miRNA:   3'- gGCGACU----------GGAC-GCCGCcGCGGGUUaa -5'
12901 3' -60.8 NC_003387.1 + 4557 0.66 0.379778
Target:  5'- uCCGCgggcucGGCCUucGCGGCGG-GCUCGGc- -3'
miRNA:   3'- -GGCGa-----CUGGA--CGCCGCCgCGGGUUaa -5'
12901 3' -60.8 NC_003387.1 + 4680 0.66 0.415402
Target:  5'- gCCGCcuUGGCUUGCuGCGcGCGUUCGAg- -3'
miRNA:   3'- -GGCG--ACUGGACGcCGC-CGCGGGUUaa -5'
12901 3' -60.8 NC_003387.1 + 4858 0.7 0.211085
Target:  5'- gCCGCgGGCCUGCGacaugaagucaCGGCGCCgGAUc -3'
miRNA:   3'- -GGCGaCUGGACGCc----------GCCGCGGgUUAa -5'
12901 3' -60.8 NC_003387.1 + 5826 0.66 0.415402
Target:  5'- cCCGCgcaaGGCg-GCGGCGGCcucaaGUCCGGUg -3'
miRNA:   3'- -GGCGa---CUGgaCGCCGCCG-----CGGGUUAa -5'
12901 3' -60.8 NC_003387.1 + 7317 0.67 0.354437
Target:  5'- gCCGU--ACCUGuCGGCuGCGCUCAAg- -3'
miRNA:   3'- -GGCGacUGGAC-GCCGcCGCGGGUUaa -5'
12901 3' -60.8 NC_003387.1 + 8083 0.66 0.415402
Target:  5'- cCCGCUG-CCgGuCGGCGccaaccCGCCCGAg- -3'
miRNA:   3'- -GGCGACuGGaC-GCCGCc-----GCGGGUUaa -5'
12901 3' -60.8 NC_003387.1 + 8449 1.06 0.000409
Target:  5'- cCCGCUGACCUGCGGCGGCGCCCAAUUc -3'
miRNA:   3'- -GGCGACUGGACGCCGCCGCGGGUUAA- -5'
12901 3' -60.8 NC_003387.1 + 10069 0.66 0.400907
Target:  5'- gCCGCggGAacgggucgggugcgcCCUGCGGCGgauucuuaugcGCGCCCu--- -3'
miRNA:   3'- -GGCGa-CU---------------GGACGCCGC-----------CGCGGGuuaa -5'
12901 3' -60.8 NC_003387.1 + 10377 0.75 0.09942
Target:  5'- cCCGCguccUGGCCUGCGcGCuGaGCGCCCGAg- -3'
miRNA:   3'- -GGCG----ACUGGACGC-CG-C-CGCGGGUUaa -5'
12901 3' -60.8 NC_003387.1 + 11556 0.7 0.233911
Target:  5'- gUGCUGA-CUGCGGUGGCGaucggcaCCAAg- -3'
miRNA:   3'- gGCGACUgGACGCCGCCGCg------GGUUaa -5'
12901 3' -60.8 NC_003387.1 + 12439 0.66 0.415402
Target:  5'- uUGCgGGCCgucGCGGCGGCGUUgGu-- -3'
miRNA:   3'- gGCGaCUGGa--CGCCGCCGCGGgUuaa -5'
12901 3' -60.8 NC_003387.1 + 12455 0.69 0.250467
Target:  5'- uUCGCUGGCg-GCGGCcuggccgcgggccuGGCGUCCGAg- -3'
miRNA:   3'- -GGCGACUGgaCGCCG--------------CCGCGGGUUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.