miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12901 3' -60.8 NC_003387.1 + 8449 1.06 0.000409
Target:  5'- cCCGCUGACCUGCGGCGGCGCCCAAUUc -3'
miRNA:   3'- -GGCGACUGGACGCCGCCGCGGGUUAA- -5'
12901 3' -60.8 NC_003387.1 + 11556 0.7 0.233911
Target:  5'- gUGCUGA-CUGCGGUGGCGaucggcaCCAAg- -3'
miRNA:   3'- gGCGACUgGACGCCGCCGCg------GGUUaa -5'
12901 3' -60.8 NC_003387.1 + 12455 0.69 0.250467
Target:  5'- uUCGCUGGCg-GCGGCcuggccgcgggccuGGCGUCCGAg- -3'
miRNA:   3'- -GGCGACUGgaCGCCG--------------CCGCGGGUUaa -5'
12901 3' -60.8 NC_003387.1 + 18746 0.66 0.415402
Target:  5'- aCCGC-GACCcGCuGCGGCaGCUCAu-- -3'
miRNA:   3'- -GGCGaCUGGaCGcCGCCG-CGGGUuaa -5'
12901 3' -60.8 NC_003387.1 + 18299 0.76 0.084143
Target:  5'- gCCGacccGGCCgcgGCGGUGGCGCCCGGc- -3'
miRNA:   3'- -GGCga--CUGGa--CGCCGCCGCGGGUUaa -5'
12901 3' -60.8 NC_003387.1 + 27789 0.75 0.09942
Target:  5'- -aGCUGACCgGCugagcaccccGGCGGUGCCCGAc- -3'
miRNA:   3'- ggCGACUGGaCG----------CCGCCGCGGGUUaa -5'
12901 3' -60.8 NC_003387.1 + 48200 0.74 0.123884
Target:  5'- cCCGC--ACCgGCGGCGGCGgCCGAg- -3'
miRNA:   3'- -GGCGacUGGaCGCCGCCGCgGGUUaa -5'
12901 3' -60.8 NC_003387.1 + 43458 0.73 0.130821
Target:  5'- gCUGCUGACCgGCGGCGaCGUCCu--- -3'
miRNA:   3'- -GGCGACUGGaCGCCGCcGCGGGuuaa -5'
12901 3' -60.8 NC_003387.1 + 37363 0.72 0.15801
Target:  5'- uCUGCgGcACCUgucggGCGGCGGCGCCCc--- -3'
miRNA:   3'- -GGCGaC-UGGA-----CGCCGCCGCGGGuuaa -5'
12901 3' -60.8 NC_003387.1 + 30707 0.7 0.222249
Target:  5'- uUCGUgcGCCUGCGG-GGCGCUCAGc- -3'
miRNA:   3'- -GGCGacUGGACGCCgCCGCGGGUUaa -5'
12901 3' -60.8 NC_003387.1 + 22954 0.71 0.195247
Target:  5'- -aGCUGACC-GCGuGgGGCGCCCc--- -3'
miRNA:   3'- ggCGACUGGaCGC-CgCCGCGGGuuaa -5'
12901 3' -60.8 NC_003387.1 + 35219 0.72 0.153834
Target:  5'- aUGCUGGCCgagcacuacgGCcGCGGCGCCCGc-- -3'
miRNA:   3'- gGCGACUGGa---------CGcCGCCGCGGGUuaa -5'
12901 3' -60.8 NC_003387.1 + 17322 0.89 0.008724
Target:  5'- aCCGCUGACCUGCGGUGGCGCUUc--- -3'
miRNA:   3'- -GGCGACUGGACGCCGCCGCGGGuuaa -5'
12901 3' -60.8 NC_003387.1 + 51856 0.71 0.195247
Target:  5'- gUCGCUG-CC-GCGGUGGC-CCCGGUg -3'
miRNA:   3'- -GGCGACuGGaCGCCGCCGcGGGUUAa -5'
12901 3' -60.8 NC_003387.1 + 48793 0.81 0.03494
Target:  5'- gCCGCUGAUCgccGCGGCGGCGgCCAu-- -3'
miRNA:   3'- -GGCGACUGGa--CGCCGCCGCgGGUuaa -5'
12901 3' -60.8 NC_003387.1 + 21652 0.73 0.134423
Target:  5'- cUCGUcGACC-GCGGCGGCGgCCGAg- -3'
miRNA:   3'- -GGCGaCUGGaCGCCGCCGCgGGUUaa -5'
12901 3' -60.8 NC_003387.1 + 48102 0.7 0.211085
Target:  5'- gCCGCUGcGCCcGCGGUGGCuCgCCGAUc -3'
miRNA:   3'- -GGCGAC-UGGaCGCCGCCGcG-GGUUAa -5'
12901 3' -60.8 NC_003387.1 + 1743 0.69 0.240542
Target:  5'- gUGCUGAUCgacagcaugagcccgGCGGCggcgcuGGCGCCCGAg- -3'
miRNA:   3'- gGCGACUGGa--------------CGCCG------CCGCGGGUUaa -5'
12901 3' -60.8 NC_003387.1 + 2053 0.77 0.067226
Target:  5'- -aGCUGGCCgcgGUGGCGGCGCCa---- -3'
miRNA:   3'- ggCGACUGGa--CGCCGCCGCGGguuaa -5'
12901 3' -60.8 NC_003387.1 + 38940 0.74 0.120545
Target:  5'- gCCGCUGAUCUGCGGCGaCGCg----- -3'
miRNA:   3'- -GGCGACUGGACGCCGCcGCGgguuaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.