miRNA display CGI


Results 21 - 40 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12917 3' -53.2 NC_003387.1 + 2596 0.66 0.835701
Target:  5'- uUCUGcgUAACGGCGAUcgugACC-AGGCGCUc -3'
miRNA:   3'- -GGGCa-GUUGCUGUUG----UGGuUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 2847 0.66 0.826688
Target:  5'- -aCGcCGACGACAugAUCGucggugAGGuCGCCc -3'
miRNA:   3'- ggGCaGUUGCUGUugUGGU------UCC-GCGG- -5'
12917 3' -53.2 NC_003387.1 + 2876 0.66 0.853073
Target:  5'- cCUCGUCGuacauCGGCAGgaacucgcuCGCCG-GGCGCg -3'
miRNA:   3'- -GGGCAGUu----GCUGUU---------GUGGUuCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 3122 0.75 0.331449
Target:  5'- gCCGcCAGCGGCAGCACUGccAGGCcaccGCCc -3'
miRNA:   3'- gGGCaGUUGCUGUUGUGGU--UCCG----CGG- -5'
12917 3' -53.2 NC_003387.1 + 3152 0.66 0.817469
Target:  5'- nCCGgCAGCGGgcGCACCucGGCgagGCCg -3'
miRNA:   3'- gGGCaGUUGCUguUGUGGuuCCG---CGG- -5'
12917 3' -53.2 NC_003387.1 + 3217 0.67 0.778737
Target:  5'- gCCCcauuGCGACAcgucgACGCCGggcGGGCGCa -3'
miRNA:   3'- -GGGcaguUGCUGU-----UGUGGU---UCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 3291 0.73 0.428888
Target:  5'- cCCCGaC-ACGGCcgccgacucgGGCGCCGAGGUGCUg -3'
miRNA:   3'- -GGGCaGuUGCUG----------UUGUGGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 3361 0.75 0.339602
Target:  5'- gUCGUCGACGGCAuCACCAAGcugGCCu -3'
miRNA:   3'- gGGCAGUUGCUGUuGUGGUUCcg-CGG- -5'
12917 3' -53.2 NC_003387.1 + 3426 0.66 0.817469
Target:  5'- gCCC-UCGGCGugcucgGCgAGCACCuGGGCGaCCu -3'
miRNA:   3'- -GGGcAGUUGC------UG-UUGUGGuUCCGC-GG- -5'
12917 3' -53.2 NC_003387.1 + 3507 0.66 0.844499
Target:  5'- gCUGUCgAACGAacCGGCGCCA--GUGCCc -3'
miRNA:   3'- gGGCAG-UUGCU--GUUGUGGUucCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 3578 0.67 0.808054
Target:  5'- -gCGUgaauggUAACGGCGGCGCCugaguuucAGGGCGUCc -3'
miRNA:   3'- ggGCA------GUUGCUGUUGUGG--------UUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 3665 0.67 0.768644
Target:  5'- cCCCGgcugAGCGGCcugaccGAgGCCGAGGgGCUg -3'
miRNA:   3'- -GGGCag--UUGCUG------UUgUGGUUCCgCGG- -5'
12917 3' -53.2 NC_003387.1 + 3741 0.67 0.798453
Target:  5'- aCCUGUCGGCgucguccaagcuGACGACGCaguGGUacGCCg -3'
miRNA:   3'- -GGGCAGUUG------------CUGUUGUGguuCCG--CGG- -5'
12917 3' -53.2 NC_003387.1 + 3814 0.7 0.639782
Target:  5'- aCCG-CAagcGCGACAACGaucgUCAGGGCGgCg -3'
miRNA:   3'- gGGCaGU---UGCUGUUGU----GGUUCCGCgG- -5'
12917 3' -53.2 NC_003387.1 + 3858 0.72 0.519974
Target:  5'- gCCGaCGAucCGGCugcGCACCAGGGCGUg -3'
miRNA:   3'- gGGCaGUU--GCUGu--UGUGGUUCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 3937 0.68 0.716287
Target:  5'- gCCG-CGGCGAuCAGCGgCGAGcuggcuGCGCCg -3'
miRNA:   3'- gGGCaGUUGCU-GUUGUgGUUC------CGCGG- -5'
12917 3' -53.2 NC_003387.1 + 4001 0.71 0.533791
Target:  5'- aCUCGUCGcggcgcacggugcuCGACAACGCCAagcgcgaGGGCGUg -3'
miRNA:   3'- -GGGCAGUu-------------GCUGUUGUGGU-------UCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 4050 0.66 0.844499
Target:  5'- uCCUGg-GGCGACGAUuCCGAGGUGgUg -3'
miRNA:   3'- -GGGCagUUGCUGUUGuGGUUCCGCgG- -5'
12917 3' -53.2 NC_003387.1 + 4315 0.71 0.573764
Target:  5'- aCCCGgCAGUGGCucAACGCCGagaAGGCGCa -3'
miRNA:   3'- -GGGCaGUUGCUG--UUGUGGU---UCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 4415 0.68 0.73122
Target:  5'- -aCGUCGACGcCGAgcugggcaaggcguuCGCCGAGcccGCGCCg -3'
miRNA:   3'- ggGCAGUUGCuGUU---------------GUGGUUC---CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.