miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12917 3' -53.2 NC_003387.1 + 306 0.7 0.617701
Target:  5'- aUCGUgAACGACAGCGggUCGAGGUggucgGCCu -3'
miRNA:   3'- gGGCAgUUGCUGUUGU--GGUUCCG-----CGG- -5'
12917 3' -53.2 NC_003387.1 + 319 0.7 0.617701
Target:  5'- gCCCGagccCGGCGACAcgcACGCCAAGauccgcguGCGCg -3'
miRNA:   3'- -GGGCa---GUUGCUGU---UGUGGUUC--------CGCGg -5'
12917 3' -53.2 NC_003387.1 + 449 0.66 0.853073
Target:  5'- gUCUGUCGccgccGCGGCG--GCCGAcGGCGaCCg -3'
miRNA:   3'- -GGGCAGU-----UGCUGUugUGGUU-CCGC-GG- -5'
12917 3' -53.2 NC_003387.1 + 659 0.73 0.438554
Target:  5'- gCCCGaugaaccauUCGACGGCGACGCUuagcGAGGuCGCg -3'
miRNA:   3'- -GGGC---------AGUUGCUGUUGUGG----UUCC-GCGg -5'
12917 3' -53.2 NC_003387.1 + 974 0.71 0.573764
Target:  5'- gUUGUguAUGcCGcCGCCGAGGCGCCg -3'
miRNA:   3'- gGGCAguUGCuGUuGUGGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 1109 0.74 0.419349
Target:  5'- gCgGUCAcAUGAgCGACGCUAGGGCGCa -3'
miRNA:   3'- gGgCAGU-UGCU-GUUGUGGUUCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 1205 0.66 0.817469
Target:  5'- gCCCG-CGACGA--ACGC---GGCGCCu -3'
miRNA:   3'- -GGGCaGUUGCUguUGUGguuCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 1296 0.72 0.499001
Target:  5'- aCCGgcgCAGuucgaGGCGGCGCCGcAGGCGCUc -3'
miRNA:   3'- gGGCa--GUUg----CUGUUGUGGU-UCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 1377 0.72 0.519974
Target:  5'- gCCGUCGGCGcucaGCGggucggggucGCGCUcgaaguugugcGAGGCGCCg -3'
miRNA:   3'- gGGCAGUUGC----UGU----------UGUGG-----------UUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 1463 0.72 0.509442
Target:  5'- cCUCGUCGAgGuCGucgaGgGCCAGGGCGUCg -3'
miRNA:   3'- -GGGCAGUUgCuGU----UgUGGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 1509 0.69 0.672825
Target:  5'- gCCGcggcCGACGugcaggcuCAGCACCucGGUGCCg -3'
miRNA:   3'- gGGCa---GUUGCu-------GUUGUGGuuCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 1562 0.68 0.726972
Target:  5'- cCCCGagGACGGCGaagcgccuaACGCCcuGGCGgUCg -3'
miRNA:   3'- -GGGCagUUGCUGU---------UGUGGuuCCGC-GG- -5'
12917 3' -53.2 NC_003387.1 + 1660 0.67 0.772698
Target:  5'- gCCaCGUCGAgGAggugugggccgguacCGACACCGcGGCGgCg -3'
miRNA:   3'- -GG-GCAGUUgCU---------------GUUGUGGUuCCGCgG- -5'
12917 3' -53.2 NC_003387.1 + 1762 0.73 0.448343
Target:  5'- gCCCG---GCGGCGGCGCU--GGCGCCc -3'
miRNA:   3'- -GGGCaguUGCUGUUGUGGuuCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 1829 0.7 0.616597
Target:  5'- gCCC-UCGACGuCGACGCCcucgacguucucaAGGGCGaCCc -3'
miRNA:   3'- -GGGcAGUUGCuGUUGUGG-------------UUCCGC-GG- -5'
12917 3' -53.2 NC_003387.1 + 2030 0.71 0.545582
Target:  5'- gCCGcCGACGGCcgccguCGCCGAgcuggccgcgguggcGGCGCCa -3'
miRNA:   3'- gGGCaGUUGCUGuu----GUGGUU---------------CCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 2107 0.66 0.835701
Target:  5'- uCCUGUUGACGugAuCGCCGA--CGCCc -3'
miRNA:   3'- -GGGCAGUUGCugUuGUGGUUccGCGG- -5'
12917 3' -53.2 NC_003387.1 + 2238 0.73 0.428888
Target:  5'- aCCGgauuuACGAguACACCAAGGgGCUg -3'
miRNA:   3'- gGGCagu--UGCUguUGUGGUUCCgCGG- -5'
12917 3' -53.2 NC_003387.1 + 2286 0.66 0.817469
Target:  5'- gUCGUCcucGCuGGCGuACGCCGAGGCGaCg -3'
miRNA:   3'- gGGCAGu--UG-CUGU-UGUGGUUCCGCgG- -5'
12917 3' -53.2 NC_003387.1 + 2445 0.7 0.59567
Target:  5'- aCCG-CAugGACGcgcGCcagGCCGAGGUGCa -3'
miRNA:   3'- gGGCaGUugCUGU---UG---UGGUUCCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.