miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12917 3' -53.2 NC_003387.1 + 17924 0.96 0.014281
Target:  5'- cCCCGaCuACGACAACACCAAGGCGCCc -3'
miRNA:   3'- -GGGCaGuUGCUGUUGUGGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 18180 0.76 0.323442
Target:  5'- aCCCGcUGACGAuCGGCugCGAGGUGCg -3'
miRNA:   3'- -GGGCaGUUGCU-GUUGugGUUCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 10016 0.75 0.331449
Target:  5'- gCCGggCGACGACGACgacgaGCCgAAGcGCGCCg -3'
miRNA:   3'- gGGCa-GUUGCUGUUG-----UGG-UUC-CGCGG- -5'
12917 3' -53.2 NC_003387.1 + 11357 0.66 0.856437
Target:  5'- gCCGUCAcuGCaGACGgccgggucgucguuuGCGgCGAucGGCGCCa -3'
miRNA:   3'- gGGCAGU--UG-CUGU---------------UGUgGUU--CCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 36766 0.81 0.1428
Target:  5'- aCCGUCAGCGAcCGGCACUc-GGCGCUg -3'
miRNA:   3'- gGGCAGUUGCU-GUUGUGGuuCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 42023 0.81 0.150934
Target:  5'- gCCGUgAugGuCGccgaGCGCCAGGGCGCCa -3'
miRNA:   3'- gGGCAgUugCuGU----UGUGGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 22265 0.79 0.209087
Target:  5'- -aCGUCGGCgGugGACuggcagACCAGGGCGCCa -3'
miRNA:   3'- ggGCAGUUG-CugUUG------UGGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 18322 0.78 0.226377
Target:  5'- gCCCGgCAACGGCGugGCCGucGUGCCc -3'
miRNA:   3'- -GGGCaGUUGCUGUugUGGUucCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 48199 0.77 0.271441
Target:  5'- gCCCGcacCGGCGGCGGCgGCCGAGGUGaCCc -3'
miRNA:   3'- -GGGCa--GUUGCUGUUG-UGGUUCCGC-GG- -5'
12917 3' -53.2 NC_003387.1 + 51306 0.76 0.323442
Target:  5'- gCUCGUCGGCGGCGGCGCCucgcacaacuucGAGcGCGaCCc -3'
miRNA:   3'- -GGGCAGUUGCUGUUGUGG------------UUC-CGC-GG- -5'
12917 3' -53.2 NC_003387.1 + 44706 0.76 0.29954
Target:  5'- gCCgCGUCggUGACGuucguuaugccucGCccgGCCGGGGCGCCg -3'
miRNA:   3'- -GG-GCAGuuGCUGU-------------UG---UGGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 46515 0.77 0.271441
Target:  5'- gCUCGcUCGGCGACuGCACCAAcGGCGgCg -3'
miRNA:   3'- -GGGC-AGUUGCUGuUGUGGUU-CCGCgG- -5'
12917 3' -53.2 NC_003387.1 + 13648 0.88 0.05095
Target:  5'- aCCGUCGGCGGCGGCucggucGCCgAGGGCGCCg -3'
miRNA:   3'- gGGCAGUUGCUGUUG------UGG-UUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 43074 0.76 0.314801
Target:  5'- cCCCGagGGCuGGC-ACACCAgggugacGGGCGCCg -3'
miRNA:   3'- -GGGCagUUG-CUGuUGUGGU-------UCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 21003 0.84 0.090917
Target:  5'- uCUCGUCGGCGACAGCGCCG-GGCuGUCa -3'
miRNA:   3'- -GGGCAGUUGCUGUUGUGGUuCCG-CGG- -5'
12917 3' -53.2 NC_003387.1 + 51350 0.78 0.251299
Target:  5'- aCCCGcUgAGCGcCGACGgCGAGGUGCCg -3'
miRNA:   3'- -GGGC-AgUUGCuGUUGUgGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 31100 0.76 0.315579
Target:  5'- aUCCGaUC-ACGACGcacccccgaGCGCCAgguGGGCGCCg -3'
miRNA:   3'- -GGGC-AGuUGCUGU---------UGUGGU---UCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 18372 0.75 0.331449
Target:  5'- -aCGUCAaccucuacaACGACGGCAuCCucGGCGCCu -3'
miRNA:   3'- ggGCAGU---------UGCUGUUGU-GGuuCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 5423 0.82 0.13135
Target:  5'- gCCCGcCGAgGACAACucgACCgAGGGCGCCg -3'
miRNA:   3'- -GGGCaGUUgCUGUUG---UGG-UUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 27833 0.79 0.192948
Target:  5'- gCCCGUCGGuCGAguuCGACAgCCGcGGCGCCa -3'
miRNA:   3'- -GGGCAGUU-GCU---GUUGU-GGUuCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.