miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12917 3' -53.2 NC_003387.1 + 17924 0.96 0.014281
Target:  5'- cCCCGaCuACGACAACACCAAGGCGCCc -3'
miRNA:   3'- -GGGCaGuUGCUGUUGUGGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 13648 0.88 0.05095
Target:  5'- aCCGUCGGCGGCGGCucggucGCCgAGGGCGCCg -3'
miRNA:   3'- gGGCAGUUGCUGUUG------UGG-UUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 21003 0.84 0.090917
Target:  5'- uCUCGUCGGCGACAGCGCCG-GGCuGUCa -3'
miRNA:   3'- -GGGCAGUUGCUGUUGUGGUuCCG-CGG- -5'
12917 3' -53.2 NC_003387.1 + 16499 0.84 0.101905
Target:  5'- gCCCuUCAuGCGACGaccucgauuACGCCGAGGCGCCa -3'
miRNA:   3'- -GGGcAGU-UGCUGU---------UGUGGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 5423 0.82 0.13135
Target:  5'- gCCCGcCGAgGACAACucgACCgAGGGCGCCg -3'
miRNA:   3'- -GGGCaGUUgCUGUUG---UGG-UUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 27538 0.82 0.13135
Target:  5'- gCCG-CGGCGGCGGCGCCGGGGCcaccgcGCCg -3'
miRNA:   3'- gGGCaGUUGCUGUUGUGGUUCCG------CGG- -5'
12917 3' -53.2 NC_003387.1 + 15425 0.82 0.13507
Target:  5'- gCgGUCGACGACcGCGCCGacgagcgcgccAGGCGCCu -3'
miRNA:   3'- gGgCAGUUGCUGuUGUGGU-----------UCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 36766 0.81 0.1428
Target:  5'- aCCGUCAGCGAcCGGCACUc-GGCGCUg -3'
miRNA:   3'- gGGCAGUUGCU-GUUGUGGuuCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 4628 0.81 0.14641
Target:  5'- aCCgCGggcgCAGCGGCAGCGCCAcccgucgAGGCGCUu -3'
miRNA:   3'- -GG-GCa---GUUGCUGUUGUGGU-------UCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 42023 0.81 0.150934
Target:  5'- gCCGUgAugGuCGccgaGCGCCAGGGCGCCa -3'
miRNA:   3'- gGGCAgUugCuGU----UGUGGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 20844 0.81 0.159048
Target:  5'- -aCGUCGGCGACGGgauagguCAgCAAGGCGCCg -3'
miRNA:   3'- ggGCAGUUGCUGUU-------GUgGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 49374 0.8 0.168013
Target:  5'- gCCGUCGACGACcGCGCCAAacgagcgggccucGGUGUCa -3'
miRNA:   3'- gGGCAGUUGCUGuUGUGGUU-------------CCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 45811 0.8 0.172663
Target:  5'- cCCCGUCAaggcgugGCGAUAGCGCacuAGGCaGCCg -3'
miRNA:   3'- -GGGCAGU-------UGCUGUUGUGgu-UCCG-CGG- -5'
12917 3' -53.2 NC_003387.1 + 27833 0.79 0.192948
Target:  5'- gCCCGUCGGuCGAguuCGACAgCCGcGGCGCCa -3'
miRNA:   3'- -GGGCAGUU-GCU---GUUGU-GGUuCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 51418 0.79 0.203582
Target:  5'- gUCGUCGACGuCGccCGCCAGGGCGUCg -3'
miRNA:   3'- gGGCAGUUGCuGUu-GUGGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 22265 0.79 0.209087
Target:  5'- -aCGUCGGCgGugGACuggcagACCAGGGCGCCa -3'
miRNA:   3'- ggGCAGUUG-CugUUG------UGGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 20211 0.78 0.220483
Target:  5'- gCCGggcgugcacgCAGCGGCAgucgucGCACCAcGGCGCCg -3'
miRNA:   3'- gGGCa---------GUUGCUGU------UGUGGUuCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 18322 0.78 0.226377
Target:  5'- gCCCGgCAACGGCGugGCCGucGUGCCc -3'
miRNA:   3'- -GGGCaGUUGCUGUugUGGUucCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 29740 0.78 0.250649
Target:  5'- gCCGUCGuCGGCgccgcccgacacgAugACCGGGGCGCCc -3'
miRNA:   3'- gGGCAGUuGCUG-------------UugUGGUUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 33747 0.78 0.251299
Target:  5'- gCUCGUCGAUG-Cu-CGCCGGGGUGCCg -3'
miRNA:   3'- -GGGCAGUUGCuGuuGUGGUUCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.