miRNA display CGI


Results 1 - 20 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12917 3' -53.2 NC_003387.1 + 11357 0.66 0.856437
Target:  5'- gCCGUCAcuGCaGACGgccgggucgucguuuGCGgCGAucGGCGCCa -3'
miRNA:   3'- gGGCAGU--UG-CUGU---------------UGUgGUU--CCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 24854 0.66 0.835701
Target:  5'- uCCUG-Cu-CGACcGCGCCGGugucgaucguGGCGCCg -3'
miRNA:   3'- -GGGCaGuuGCUGuUGUGGUU----------CCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 2596 0.66 0.835701
Target:  5'- uUCUGcgUAACGGCGAUcgugACC-AGGCGCUc -3'
miRNA:   3'- -GGGCa-GUUGCUGUUG----UGGuUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 32180 0.66 0.83481
Target:  5'- aUCGgcgCAGcCGACgAACACCGcaggggcAGGCGCa -3'
miRNA:   3'- gGGCa--GUU-GCUG-UUGUGGU-------UCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 51800 0.66 0.83302
Target:  5'- aCCGUCGuguuaggcgucuugAUGcACAGCGCgaacaCGAGcGCGCCg -3'
miRNA:   3'- gGGCAGU--------------UGC-UGUUGUG-----GUUC-CGCGG- -5'
12917 3' -53.2 NC_003387.1 + 14867 0.66 0.817469
Target:  5'- aUCGUCGA-GGCGAgcCGCCG-GGCGCa -3'
miRNA:   3'- gGGCAGUUgCUGUU--GUGGUuCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 34990 0.66 0.817469
Target:  5'- cCCUGgCGGCccGGCcGgGCCGGGGCGCa -3'
miRNA:   3'- -GGGCaGUUG--CUGuUgUGGUUCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 14427 0.66 0.817469
Target:  5'- -aCGaCGACGACAGCguGCCGccGCGCg -3'
miRNA:   3'- ggGCaGUUGCUGUUG--UGGUucCGCGg -5'
12917 3' -53.2 NC_003387.1 + 3152 0.66 0.817469
Target:  5'- nCCGgCAGCGGgcGCACCucGGCgagGCCg -3'
miRNA:   3'- gGGCaGUUGCUguUGUGGuuCCG---CGG- -5'
12917 3' -53.2 NC_003387.1 + 39834 0.66 0.835701
Target:  5'- gCCGUCGaggccgcucACGuuGACGCCAgacggcaaagacAGGCccGCCg -3'
miRNA:   3'- gGGCAGU---------UGCugUUGUGGU------------UCCG--CGG- -5'
12917 3' -53.2 NC_003387.1 + 7322 0.66 0.843629
Target:  5'- aCCGUC-ACGAuCGGCucgggcgGCCG-GGCGCa -3'
miRNA:   3'- gGGCAGuUGCU-GUUG-------UGGUuCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 4050 0.66 0.844499
Target:  5'- uCCUGg-GGCGACGAUuCCGAGGUGgUg -3'
miRNA:   3'- -GGGCagUUGCUGUUGuGGUUCCGCgG- -5'
12917 3' -53.2 NC_003387.1 + 23813 0.66 0.853073
Target:  5'- gCCGcgCAGCaGAUAcgugagggcgccGCGCCGGgacucGGCGCCg -3'
miRNA:   3'- gGGCa-GUUG-CUGU------------UGUGGUU-----CCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 21535 0.66 0.853073
Target:  5'- gCgCGUCGcguuCGACGugccgcccgGCACCGAGGCaaCCg -3'
miRNA:   3'- -GgGCAGUu---GCUGU---------UGUGGUUCCGc-GG- -5'
12917 3' -53.2 NC_003387.1 + 2876 0.66 0.853073
Target:  5'- cCUCGUCGuacauCGGCAGgaacucgcuCGCCG-GGCGCg -3'
miRNA:   3'- -GGGCAGUu----GCUGUU---------GUGGUuCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 35463 0.66 0.847956
Target:  5'- gUCGUCGAacuggaucgacguuuCGAC-ACGCCAcGGCGUg -3'
miRNA:   3'- gGGCAGUU---------------GCUGuUGUGGUuCCGCGg -5'
12917 3' -53.2 NC_003387.1 + 27337 0.66 0.847956
Target:  5'- uCUCGUCGAgcagccgcagccccuCGACcuCGCCGcucuuGGCGCUg -3'
miRNA:   3'- -GGGCAGUU---------------GCUGuuGUGGUu----CCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 29303 0.66 0.844499
Target:  5'- gCCCG-CAAUGAC---GC--AGGCGCCg -3'
miRNA:   3'- -GGGCaGUUGCUGuugUGguUCCGCGG- -5'
12917 3' -53.2 NC_003387.1 + 21114 0.66 0.844499
Target:  5'- gCgGUC-ACGA--AUACCGAGGCggGCCa -3'
miRNA:   3'- gGgCAGuUGCUguUGUGGUUCCG--CGG- -5'
12917 3' -53.2 NC_003387.1 + 16380 0.66 0.844499
Target:  5'- gCCCGUCGuuucgcaguCGACGACgACCAAu-UGCCu -3'
miRNA:   3'- -GGGCAGUu--------GCUGUUG-UGGUUccGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.