miRNA display CGI


Results 21 - 40 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12924 3' -67.3 NC_003387.1 + 5622 0.67 0.168791
Target:  5'- aGGCCGCguugCGGCGGGUuuuguugauGCGGUgaaCCGUGc -3'
miRNA:   3'- -CCGGCGga--GCCGCUCG---------CGCCG---GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 5708 0.74 0.052114
Target:  5'- gGGCCGCCaaugaaGuCGAGCaccagGCGGCCCGCGc -3'
miRNA:   3'- -CCGGCGGag----CcGCUCG-----CGCCGGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 6368 0.67 0.189763
Target:  5'- cGCUugGCCUCGGCcgcGGGCgacgccuugcguggGCGGCcCCGCu -3'
miRNA:   3'- cCGG--CGGAGCCG---CUCG--------------CGCCG-GGCGc -5'
12924 3' -67.3 NC_003387.1 + 6639 0.69 0.139251
Target:  5'- cGGCCGUCUUGGgcuCGucgucgacccgcucaAGCGCGGUgCGCu -3'
miRNA:   3'- -CCGGCGGAGCC---GC---------------UCGCGCCGgGCGc -5'
12924 3' -67.3 NC_003387.1 + 6804 0.73 0.066281
Target:  5'- uGGUCGCCcugCGGCucaaGGCGCGGUUCGCc -3'
miRNA:   3'- -CCGGCGGa--GCCGc---UCGCGCCGGGCGc -5'
12924 3' -67.3 NC_003387.1 + 7743 0.76 0.03672
Target:  5'- -aCCGCCUCGGCG-GCaGCGGCgaUCGCGg -3'
miRNA:   3'- ccGGCGGAGCCGCuCG-CGCCG--GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 7780 0.67 0.185577
Target:  5'- cGGCCugaGCCUUcGCGAGCGCcucgucgccccaGCCCgGCGa -3'
miRNA:   3'- -CCGG---CGGAGcCGCUCGCGc-----------CGGG-CGC- -5'
12924 3' -67.3 NC_003387.1 + 7964 0.73 0.066281
Target:  5'- gGGCCGCUUcaCGGCGGGCG-GGUgCUGCGc -3'
miRNA:   3'- -CCGGCGGA--GCCGCUCGCgCCG-GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 8037 0.77 0.028696
Target:  5'- uGGCCGCgcgagccuaucugCUCGaCGAGCugGCGGCCCGCGc -3'
miRNA:   3'- -CCGGCG-------------GAGCcGCUCG--CGCCGGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 8899 0.66 0.218237
Target:  5'- cGCCGCCauuuUCGGCGAGgGCaacguGCucacguccgaggccaCCGCGa -3'
miRNA:   3'- cCGGCGG----AGCCGCUCgCGc----CG---------------GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 9011 0.69 0.118134
Target:  5'- uGCCGCCgucgagcaccUGGCGGGCGCcGUCgGCGa -3'
miRNA:   3'- cCGGCGGa---------GCCGCUCGCGcCGGgCGC- -5'
12924 3' -67.3 NC_003387.1 + 9346 0.69 0.132985
Target:  5'- cGGgCGCCgugcaGGCGAGCuaucuccguuucguGCcgcucccGGCCCGCGa -3'
miRNA:   3'- -CCgGCGGag---CCGCUCG--------------CG-------CCGGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 9575 0.68 0.14104
Target:  5'- cGCCGCCgaacgugCGGUGcAGgaacgcccaccacCGCGGCgCCGCGc -3'
miRNA:   3'- cCGGCGGa------GCCGC-UC-------------GCGCCG-GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 9775 0.71 0.091032
Target:  5'- gGGCgGCaCUUGGCGAGCGCGaCCauguugucgaGCGa -3'
miRNA:   3'- -CCGgCG-GAGCCGCUCGCGCcGGg---------CGC- -5'
12924 3' -67.3 NC_003387.1 + 10180 0.67 0.1865
Target:  5'- cGCuCGCCagcUCGGCGucGGUcauGCGGgCCGCGu -3'
miRNA:   3'- cCG-GCGG---AGCCGC--UCG---CGCCgGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 10374 0.71 0.093452
Target:  5'- gGGCCGCaagcuggcccgcaacCUCGGCGAcgguucgGCGCucggcaagcaguacGGCUCGCGg -3'
miRNA:   3'- -CCGGCG---------------GAGCCGCU-------CGCG--------------CCGGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 10517 0.66 0.216125
Target:  5'- cGCuCGgCUCGGCGA-UGCGGgCCGgGu -3'
miRNA:   3'- cCG-GCgGAGCCGCUcGCGCCgGGCgC- -5'
12924 3' -67.3 NC_003387.1 + 10610 0.67 0.181925
Target:  5'- cGGUCGCCUCGGUcaugcaGGaCGCGa-CCGCGg -3'
miRNA:   3'- -CCGGCGGAGCCGc-----UC-GCGCcgGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 10685 0.73 0.058005
Target:  5'- cGGCCGCCUCGGCG-GUGgCcGCCgGUa -3'
miRNA:   3'- -CCGGCGGAGCCGCuCGC-GcCGGgCGc -5'
12924 3' -67.3 NC_003387.1 + 10750 0.71 0.098476
Target:  5'- cGGCgGCCUCcGCGcGCagcuccucgcugGCGGCCUGCa -3'
miRNA:   3'- -CCGgCGGAGcCGCuCG------------CGCCGGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.