miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12924 3' -67.3 NC_003387.1 + 194 0.67 0.195955
Target:  5'- cGGCCGCCagcUCGGCGGcuugucgcucuuGuCGCGGUugcacUUGCGg -3'
miRNA:   3'- -CCGGCGG---AGCCGCU------------C-GCGCCG-----GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 455 0.68 0.14104
Target:  5'- cGCCGCCgCGGCGgccgacggcgaccGGCGCGaGCUgcucguCGCGa -3'
miRNA:   3'- cCGGCGGaGCCGC-------------UCGCGC-CGG------GCGC- -5'
12924 3' -67.3 NC_003387.1 + 1753 0.67 0.181925
Target:  5'- cGGCCGCUaUCGGCucggGGGCGCuucgcGCUgGCGu -3'
miRNA:   3'- -CCGGCGG-AGCCG----CUCGCGc----CGGgCGC- -5'
12924 3' -67.3 NC_003387.1 + 1825 0.66 0.200838
Target:  5'- cGGCCGauaUGGCGAaggGCuGCGGCCUGUu -3'
miRNA:   3'- -CCGGCggaGCCGCU---CG-CGCCGGGCGc -5'
12924 3' -67.3 NC_003387.1 + 2038 0.7 0.101082
Target:  5'- cGGCCGCCgUCGcCGAGC-UGGC-CGCGg -3'
miRNA:   3'- -CCGGCGG-AGCcGCUCGcGCCGgGCGC- -5'
12924 3' -67.3 NC_003387.1 + 2350 0.72 0.075489
Target:  5'- aGGCCGCCgUCGGCgucGAGCGCcacguacgcGGUcacguugCCGCGg -3'
miRNA:   3'- -CCGGCGG-AGCCG---CUCGCG---------CCG-------GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 2706 0.69 0.121225
Target:  5'- aGGuuGUgCUCGGCGA-CGCGGgCgGCGg -3'
miRNA:   3'- -CCggCG-GAGCCGCUcGCGCCgGgCGC- -5'
12924 3' -67.3 NC_003387.1 + 2879 0.68 0.1503
Target:  5'- cGUCGUacaUCGGCaggaacucgcucgccGGGCGCGGCaggCCGCGg -3'
miRNA:   3'- cCGGCGg--AGCCG---------------CUCGCGCCG---GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 3299 0.7 0.106491
Target:  5'- cGGCCGCCgacUCgGGCGccgaggugcuguGGCGUgacaccgaGGCCCGCu -3'
miRNA:   3'- -CCGGCGG---AG-CCGC------------UCGCG--------CCGGGCGc -5'
12924 3' -67.3 NC_003387.1 + 3419 0.7 0.103754
Target:  5'- gGGCCGugcCCUCGGCGuGCuCGGCgaGCa -3'
miRNA:   3'- -CCGGC---GGAGCCGCuCGcGCCGggCGc -5'
12924 3' -67.3 NC_003387.1 + 3503 0.67 0.176566
Target:  5'- cGGCCGCCUCGaccggcagauccguuGCGGGCucagcaacgucgacgGCcgccGCCUGCGc -3'
miRNA:   3'- -CCGGCGGAGC---------------CGCUCG---------------CGc---CGGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 3929 0.72 0.069901
Target:  5'- uGGCCGCCgccgCGGCGAucaGCGGCgaGCu -3'
miRNA:   3'- -CCGGCGGa---GCCGCUcg-CGCCGggCGc -5'
12924 3' -67.3 NC_003387.1 + 4177 0.66 0.221438
Target:  5'- uGGCaCGugaCCUCGGCGcGGUGCuucGGCcaCCGCGu -3'
miRNA:   3'- -CCG-GC---GGAGCCGC-UCGCG---CCG--GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 4289 0.69 0.127634
Target:  5'- aGGCCGCg--GGCGAGCaGCG-CaCCGCGa -3'
miRNA:   3'- -CCGGCGgagCCGCUCG-CGCcG-GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 4324 0.66 0.210922
Target:  5'- uGGuuGCC-CaGGCu-GCGCccGGCCCGCu -3'
miRNA:   3'- -CCggCGGaG-CCGcuCGCG--CCGGGCGc -5'
12924 3' -67.3 NC_003387.1 + 4413 0.67 0.177449
Target:  5'- cGCCGCCUCGauuucguCGAG-GCGGgCgGCGa -3'
miRNA:   3'- cCGGCGGAGCc------GCUCgCGCCgGgCGC- -5'
12924 3' -67.3 NC_003387.1 + 4525 0.7 0.109297
Target:  5'- cGGCCGCCgccgcCGGUgcGGGCaccuuGCgGGCCUGCGc -3'
miRNA:   3'- -CCGGCGGa----GCCG--CUCG-----CG-CCGGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 4576 0.69 0.137836
Target:  5'- cGCgGgCCUCGGUGGcGCGCuGCgCGCGg -3'
miRNA:   3'- cCGgC-GGAGCCGCU-CGCGcCGgGCGC- -5'
12924 3' -67.3 NC_003387.1 + 4759 0.66 0.200838
Target:  5'- uGCCGCCcagcucgCGGUGcuuCGCGGCCCacacgGCGu -3'
miRNA:   3'- cCGGCGGa------GCCGCuc-GCGCCGGG-----CGC- -5'
12924 3' -67.3 NC_003387.1 + 5307 0.66 0.216125
Target:  5'- aGGCCcuCCUCGGgcucgGGGCGgGGCCgGUu -3'
miRNA:   3'- -CCGGc-GGAGCCg----CUCGCgCCGGgCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.