miRNA display CGI


Results 1 - 20 of 185 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12924 3' -67.3 NC_003387.1 + 42397 0.66 0.226315
Target:  5'- cGGCUGCCUgacugaGGagcaguuCGAGCa-GGCCCGCa -3'
miRNA:   3'- -CCGGCGGAg-----CC-------GCUCGcgCCGGGCGc -5'
12924 3' -67.3 NC_003387.1 + 23271 0.66 0.210922
Target:  5'- cGCCGuUCUCGaucgcgaggauaGCGAccGCGCGGgCCGCu -3'
miRNA:   3'- cCGGC-GGAGC------------CGCU--CGCGCCgGGCGc -5'
12924 3' -67.3 NC_003387.1 + 37544 0.66 0.210922
Target:  5'- gGGCCuCCUCGuCGAucaccuCGCGGCgCGCGu -3'
miRNA:   3'- -CCGGcGGAGCcGCUc-----GCGCCGgGCGC- -5'
12924 3' -67.3 NC_003387.1 + 4324 0.66 0.210922
Target:  5'- uGGuuGCC-CaGGCu-GCGCccGGCCCGCu -3'
miRNA:   3'- -CCggCGGaG-CCGcuCGCG--CCGGGCGc -5'
12924 3' -67.3 NC_003387.1 + 11672 0.66 0.210922
Target:  5'- aGCgGCCUCGGCGAucGCGUGGgugucaauguCgCCGuCGa -3'
miRNA:   3'- cCGgCGGAGCCGCU--CGCGCC----------G-GGC-GC- -5'
12924 3' -67.3 NC_003387.1 + 25481 0.66 0.205827
Target:  5'- gGGCCGCCUCGaccGCGcgugucAGCuCGGCCgGg- -3'
miRNA:   3'- -CCGGCGGAGC---CGC------UCGcGCCGGgCgc -5'
12924 3' -67.3 NC_003387.1 + 50160 0.66 0.205323
Target:  5'- gGGUCGgCguacaCGGCGAGgaucugcCGCGGCgaCCGCGu -3'
miRNA:   3'- -CCGGCgGa----GCCGCUC-------GCGCCG--GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 51498 0.66 0.200838
Target:  5'- cGGCCaGCaggaUCaGCGGGUuaGGCgCCGCGu -3'
miRNA:   3'- -CCGG-CGg---AGcCGCUCGcgCCG-GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 42727 0.66 0.200838
Target:  5'- cGGCCGCgggaaCGGguCGGGUGCGcCCUGCGg -3'
miRNA:   3'- -CCGGCGga---GCC--GCUCGCGCcGGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 41962 0.66 0.210922
Target:  5'- aGGCuCGUacCGGCGAuCGCGGCCgugucaGCGg -3'
miRNA:   3'- -CCG-GCGgaGCCGCUcGCGCCGGg-----CGC- -5'
12924 3' -67.3 NC_003387.1 + 39758 0.66 0.214553
Target:  5'- uGGCCGCC-CGGUacGAGCcgccagacgccgacGUGGCaCUGCc -3'
miRNA:   3'- -CCGGCGGaGCCG--CUCG--------------CGCCG-GGCGc -5'
12924 3' -67.3 NC_003387.1 + 5307 0.66 0.216125
Target:  5'- aGGCCcuCCUCGGgcucgGGGCGgGGCCgGUu -3'
miRNA:   3'- -CCGGc-GGAGCCg----CUCGCgCCGGgCGc -5'
12924 3' -67.3 NC_003387.1 + 49665 0.66 0.226862
Target:  5'- cGGCuCGaCCgaGGCGGGCGgGaacGCCUGCGc -3'
miRNA:   3'- -CCG-GC-GGagCCGCUCGCgC---CGGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 22584 0.66 0.226315
Target:  5'- gGGUgGCCUCGGUGcggccacggucgaAGCucaGGCCCuuGCGg -3'
miRNA:   3'- -CCGgCGGAGCCGC-------------UCGcg-CCGGG--CGC- -5'
12924 3' -67.3 NC_003387.1 + 4177 0.66 0.221438
Target:  5'- uGGCaCGugaCCUCGGCGcGGUGCuucGGCcaCCGCGu -3'
miRNA:   3'- -CCG-GC---GGAGCCGC-UCGCG---CCG--GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 31219 0.66 0.220902
Target:  5'- cGGCCGgCUCGuGC-AGCGacacgaaccagccCGGCCCGa- -3'
miRNA:   3'- -CCGGCgGAGC-CGcUCGC-------------GCCGGGCgc -5'
12924 3' -67.3 NC_003387.1 + 52090 0.66 0.216125
Target:  5'- cGCUGCCgcggCGGCGA-CGCuGCCCuCGc -3'
miRNA:   3'- cCGGCGGa---GCCGCUcGCGcCGGGcGC- -5'
12924 3' -67.3 NC_003387.1 + 21777 0.66 0.216125
Target:  5'- gGGCaGCCagCGGCGcacgaucuGCGaCGGCCCGg- -3'
miRNA:   3'- -CCGgCGGa-GCCGCu-------CGC-GCCGGGCgc -5'
12924 3' -67.3 NC_003387.1 + 19868 0.66 0.216125
Target:  5'- cGG-CGCagUCGGCGA-CGCGGaaccgccccgcCCCGCGg -3'
miRNA:   3'- -CCgGCGg-AGCCGCUcGCGCC-----------GGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 14796 0.66 0.216125
Target:  5'- uGGCgUGCC-CGGCG-GUGcCGaGCCaCGCGg -3'
miRNA:   3'- -CCG-GCGGaGCCGCuCGC-GC-CGG-GCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.