miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12924 3' -67.3 NC_003387.1 + 21696 1.08 0.000097
Target:  5'- uGGCCGCCUCGGCGAGCGCGGCCCGCGc -3'
miRNA:   3'- -CCGGCGGAGCCGCUCGCGCCGGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 50430 0.72 0.072547
Target:  5'- cGUCGCCUCGGCGuacgccagcgaGGaCGacgucgagccgacccCGGCCCGCGa -3'
miRNA:   3'- cCGGCGGAGCCGC-----------UC-GC---------------GCCGGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 43953 0.71 0.084125
Target:  5'- cGCCGCCgcaCGGCGAa---GGCCCGCa -3'
miRNA:   3'- cCGGCGGa--GCCGCUcgcgCCGGGCGc -5'
12924 3' -67.3 NC_003387.1 + 42397 0.66 0.226315
Target:  5'- cGGCUGCCUgacugaGGagcaguuCGAGCa-GGCCCGCa -3'
miRNA:   3'- -CCGGCGGAg-----CC-------GCUCGcgCCGGGCGc -5'
12924 3' -67.3 NC_003387.1 + 18201 0.76 0.037119
Target:  5'- aGGUgCGCCUCGGCGAcGCGaCGaccggcgaccuggucGCCCGCGg -3'
miRNA:   3'- -CCG-GCGGAGCCGCU-CGC-GC---------------CGGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 41151 0.75 0.040799
Target:  5'- cGGCCGCUgcgagugUCagGGCGAGUGCGGCCgguCGCa -3'
miRNA:   3'- -CCGGCGG-------AG--CCGCUCGCGCCGG---GCGc -5'
12924 3' -67.3 NC_003387.1 + 25804 0.75 0.048082
Target:  5'- cGGCgGCCUCGGUG---GCGGCCUGCu -3'
miRNA:   3'- -CCGgCGGAGCCGCucgCGCCGGGCGc -5'
12924 3' -67.3 NC_003387.1 + 42512 0.74 0.049391
Target:  5'- -uUCGCCUgGGCGAccgaucaCGCGGCCCGCa -3'
miRNA:   3'- ccGGCGGAgCCGCUc------GCGCCGGGCGc -5'
12924 3' -67.3 NC_003387.1 + 13677 0.73 0.058005
Target:  5'- cGCCGUCgacgcuaugUCGGCguucgucccGAGCGCGGCCCagGCGg -3'
miRNA:   3'- cCGGCGG---------AGCCG---------CUCGCGCCGGG--CGC- -5'
12924 3' -67.3 NC_003387.1 + 43100 0.72 0.069901
Target:  5'- cGGgCGCCggguaCGaGCGcgacGGCGCGGCgCCGCGg -3'
miRNA:   3'- -CCgGCGGa----GC-CGC----UCGCGCCG-GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 46948 0.73 0.062842
Target:  5'- uGUCGauCCgCGGCGAGCGCGGCCgGUu -3'
miRNA:   3'- cCGGC--GGaGCCGCUCGCGCCGGgCGc -5'
12924 3' -67.3 NC_003387.1 + 10685 0.73 0.058005
Target:  5'- cGGCCGCCUCGGCG-GUGgCcGCCgGUa -3'
miRNA:   3'- -CCGGCGGAGCCGCuCGC-GcCGGgCGc -5'
12924 3' -67.3 NC_003387.1 + 50507 0.79 0.019658
Target:  5'- uGGCCGCCUgacCGGCGAGCaCGaggcaccccugaGCCCGCGg -3'
miRNA:   3'- -CCGGCGGA---GCCGCUCGcGC------------CGGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 6804 0.73 0.066281
Target:  5'- uGGUCGCCcugCGGCucaaGGCGCGGUUCGCc -3'
miRNA:   3'- -CCGGCGGa--GCCGc---UCGCGCCGGGCGc -5'
12924 3' -67.3 NC_003387.1 + 8037 0.77 0.028696
Target:  5'- uGGCCGCgcgagccuaucugCUCGaCGAGCugGCGGCCCGCGc -3'
miRNA:   3'- -CCGGCG-------------GAGCcGCUCG--CGCCGGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 29425 0.74 0.052114
Target:  5'- aGGCCGCCgcagCGGCccGCGCGGUcgcuauccUCGCGa -3'
miRNA:   3'- -CCGGCGGa---GCCGcuCGCGCCG--------GGCGC- -5'
12924 3' -67.3 NC_003387.1 + 38732 0.72 0.069901
Target:  5'- aGGCCGCCagGGCGAaggGCauGCGguucgagauuGCCCGCGa -3'
miRNA:   3'- -CCGGCGGagCCGCU---CG--CGC----------CGGGCGC- -5'
12924 3' -67.3 NC_003387.1 + 35657 0.72 0.0798
Target:  5'- uGGCCGaCCUCGaccGCGGGCgGUGGCUgaGCGg -3'
miRNA:   3'- -CCGGC-GGAGC---CGCUCG-CGCCGGg-CGC- -5'
12924 3' -67.3 NC_003387.1 + 24283 0.76 0.03672
Target:  5'- cGCCGCCUCGGCGuGCGC-GCCgaucaCGUGa -3'
miRNA:   3'- cCGGCGGAGCCGCuCGCGcCGG-----GCGC- -5'
12924 3' -67.3 NC_003387.1 + 28033 0.75 0.045564
Target:  5'- aGCCGauCCUCGGCGAGCugacgaccaaGUGGCUCGCc -3'
miRNA:   3'- cCGGC--GGAGCCGCUCG----------CGCCGGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.