Results 1 - 20 of 185 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12924 | 3' | -67.3 | NC_003387.1 | + | 21696 | 1.08 | 0.000097 |
Target: 5'- uGGCCGCCUCGGCGAGCGCGGCCCGCGc -3' miRNA: 3'- -CCGGCGGAGCCGCUCGCGCCGGGCGC- -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 17099 | 0.81 | 0.015375 |
Target: 5'- cGGCCGCCUCGGCGGGCuccucGgGGCCguagGCGa -3' miRNA: 3'- -CCGGCGGAGCCGCUCG-----CgCCGGg---CGC- -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 50507 | 0.79 | 0.019658 |
Target: 5'- uGGCCGCCUgacCGGCGAGCaCGaggcaccccugaGCCCGCGg -3' miRNA: 3'- -CCGGCGGA---GCCGCUCGcGC------------CGGGCGC- -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 8037 | 0.77 | 0.028696 |
Target: 5'- uGGCCGCgcgagccuaucugCUCGaCGAGCugGCGGCCCGCGc -3' miRNA: 3'- -CCGGCG-------------GAGCcGCUCG--CGCCGGGCGC- -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 7743 | 0.76 | 0.03672 |
Target: 5'- -aCCGCCUCGGCG-GCaGCGGCgaUCGCGg -3' miRNA: 3'- ccGGCGGAGCCGCuCG-CGCCG--GGCGC- -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 19272 | 0.76 | 0.03672 |
Target: 5'- cGGCCGCCUUGcGCGAGgugGUGGCgCGCa -3' miRNA: 3'- -CCGGCGGAGC-CGCUCg--CGCCGgGCGc -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 24283 | 0.76 | 0.03672 |
Target: 5'- cGCCGCCUCGGCGuGCGC-GCCgaucaCGUGa -3' miRNA: 3'- cCGGCGGAGCCGCuCGCGcCGG-----GCGC- -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 18201 | 0.76 | 0.037119 |
Target: 5'- aGGUgCGCCUCGGCGAcGCGaCGaccggcgaccuggucGCCCGCGg -3' miRNA: 3'- -CCG-GCGGAGCCGCU-CGC-GC---------------CGGGCGC- -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 41151 | 0.75 | 0.040799 |
Target: 5'- cGGCCGCUgcgagugUCagGGCGAGUGCGGCCgguCGCa -3' miRNA: 3'- -CCGGCGG-------AG--CCGCUCGCGCCGG---GCGc -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 35552 | 0.75 | 0.043175 |
Target: 5'- cGCCGCCcaggCGGCGcaccagcucAGCGCGGgCCGCc -3' miRNA: 3'- cCGGCGGa---GCCGC---------UCGCGCCgGGCGc -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 28033 | 0.75 | 0.045564 |
Target: 5'- aGCCGauCCUCGGCGAGCugacgaccaaGUGGCUCGCc -3' miRNA: 3'- cCGGC--GGAGCCGCUCG----------CGCCGGGCGc -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 25804 | 0.75 | 0.048082 |
Target: 5'- cGGCgGCCUCGGUG---GCGGCCUGCu -3' miRNA: 3'- -CCGgCGGAGCCGCucgCGCCGGGCGc -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 42512 | 0.74 | 0.049391 |
Target: 5'- -uUCGCCUgGGCGAccgaucaCGCGGCCCGCa -3' miRNA: 3'- ccGGCGGAgCCGCUc------GCGCCGGGCGc -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 5708 | 0.74 | 0.052114 |
Target: 5'- gGGCCGCCaaugaaGuCGAGCaccagGCGGCCCGCGc -3' miRNA: 3'- -CCGGCGGag----CcGCUCG-----CGCCGGGCGC- -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 29425 | 0.74 | 0.052114 |
Target: 5'- aGGCCGCCgcagCGGCccGCGCGGUcgcuauccUCGCGa -3' miRNA: 3'- -CCGGCGGa---GCCGcuCGCGCCG--------GGCGC- -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 44915 | 0.74 | 0.052114 |
Target: 5'- cGGCCGCCa-GGCGuugcAGCuCGGCCUGCa -3' miRNA: 3'- -CCGGCGGagCCGC----UCGcGCCGGGCGc -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 13677 | 0.73 | 0.058005 |
Target: 5'- cGCCGUCgacgcuaugUCGGCguucgucccGAGCGCGGCCCagGCGg -3' miRNA: 3'- cCGGCGG---------AGCCG---------CUCGCGCCGGG--CGC- -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 35689 | 0.73 | 0.058005 |
Target: 5'- --aCGCC-CGGCGAGgGCGGCagccgCCGCGg -3' miRNA: 3'- ccgGCGGaGCCGCUCgCGCCG-----GGCGC- -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 10685 | 0.73 | 0.058005 |
Target: 5'- cGGCCGCCUCGGCG-GUGgCcGCCgGUa -3' miRNA: 3'- -CCGGCGGAGCCGCuCGC-GcCGGgCGc -5' |
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12924 | 3' | -67.3 | NC_003387.1 | + | 51402 | 0.73 | 0.058005 |
Target: 5'- cGGCCGgUgacCGGCGAGCGCcugcGGCgCCGCc -3' miRNA: 3'- -CCGGCgGa--GCCGCUCGCG----CCG-GGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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