miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12927 5' -54.2 NC_003387.1 + 24138 0.66 0.775584
Target:  5'- -cGG-CGGUGUugagcuUGAGGGCGUcgUCGa -3'
miRNA:   3'- uaCCaGCCGCA------GCUCCCGUAaaAGCg -5'
12927 5' -54.2 NC_003387.1 + 24662 0.68 0.612573
Target:  5'- -aGGUCGccaGCGcCGAGGGUGac-UCGCg -3'
miRNA:   3'- uaCCAGC---CGCaGCUCCCGUaaaAGCG- -5'
12927 5' -54.2 NC_003387.1 + 25109 0.66 0.744451
Target:  5'- -cGGUCGGUGUCGucGaGGCcc--UCGUa -3'
miRNA:   3'- uaCCAGCCGCAGCu-C-CCGuaaaAGCG- -5'
12927 5' -54.2 NC_003387.1 + 25889 0.71 0.46219
Target:  5'- cUGGUgcucccCGGCGUCcAGGGCGg---CGCg -3'
miRNA:   3'- uACCA------GCCGCAGcUCCCGUaaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 28157 0.66 0.733823
Target:  5'- --cGUCGGUGUUGAGcccgaacccGGCGacagUUUCGCu -3'
miRNA:   3'- uacCAGCCGCAGCUC---------CCGUa---AAAGCG- -5'
12927 5' -54.2 NC_003387.1 + 28356 0.69 0.568259
Target:  5'- uUGGaaGGCGUCGugucgcAGGGCGgg--CGCa -3'
miRNA:   3'- uACCagCCGCAGC------UCCCGUaaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 30260 0.71 0.46219
Target:  5'- -gGGUCGGCGcCGGggucGGGCAgccacUCGUa -3'
miRNA:   3'- uaCCAGCCGCaGCU----CCCGUaaa--AGCG- -5'
12927 5' -54.2 NC_003387.1 + 30685 0.76 0.23309
Target:  5'- -cGGUCGcacCGgCGGGGGCGUUUUCGUg -3'
miRNA:   3'- uaCCAGCc--GCaGCUCCCGUAAAAGCG- -5'
12927 5' -54.2 NC_003387.1 + 34045 0.74 0.30189
Target:  5'- cUGGUCGGCGUguGGGGCGgccuaagCGCc -3'
miRNA:   3'- uACCAGCCGCAgcUCCCGUaaaa---GCG- -5'
12927 5' -54.2 NC_003387.1 + 34519 0.66 0.765343
Target:  5'- -cGGUCGucGCGUcgcCGAGGcGCAcc-UCGCa -3'
miRNA:   3'- uaCCAGC--CGCA---GCUCC-CGUaaaAGCG- -5'
12927 5' -54.2 NC_003387.1 + 34805 0.68 0.657159
Target:  5'- gGUGuuGUCGuaGUCGGGGGCGUcgagaaugUUCGUc -3'
miRNA:   3'- -UAC--CAGCcgCAGCUCCCGUAa-------AAGCG- -5'
12927 5' -54.2 NC_003387.1 + 38506 0.66 0.720933
Target:  5'- --cGUgGGCGUgCGAGGGCGgcaagugagCGCc -3'
miRNA:   3'- uacCAgCCGCA-GCUCCCGUaaaa-----GCG- -5'
12927 5' -54.2 NC_003387.1 + 44858 0.71 0.46219
Target:  5'- -aGGUCGGUgccguagccGUCGGGGGCGUcggCGa -3'
miRNA:   3'- uaCCAGCCG---------CAGCUCCCGUAaaaGCg -5'
12927 5' -54.2 NC_003387.1 + 45059 0.7 0.52479
Target:  5'- -aGGUCGccgagcGCGUCGAGGGCcgUccugggccggugUUCGg -3'
miRNA:   3'- uaCCAGC------CGCAGCUCCCGuaA------------AAGCg -5'
12927 5' -54.2 NC_003387.1 + 45235 0.74 0.325376
Target:  5'- cGUGGUCGGaGUCGAuGGGCugga-CGCg -3'
miRNA:   3'- -UACCAGCCgCAGCU-CCCGuaaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 47924 0.66 0.744451
Target:  5'- cUGGUCGGCGgcaGGcauGGGCAcga-CGCc -3'
miRNA:   3'- uACCAGCCGCag-CU---CCCGUaaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 49197 0.73 0.358759
Target:  5'- cUGGggCGGCGgCGGGGGCAcUggCGCc -3'
miRNA:   3'- uACCa-GCCGCaGCUCCCGUaAaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 49492 0.67 0.712266
Target:  5'- -cGGUgcgcccgccCGGCGUCGAcgugucgcaaugGGGCuggacgUCGCa -3'
miRNA:   3'- uaCCA---------GCCGCAGCU------------CCCGuaaa--AGCG- -5'
12927 5' -54.2 NC_003387.1 + 50900 0.71 0.46219
Target:  5'- -gGcGUCGaCGUCGAGGGCAUggUCa- -3'
miRNA:   3'- uaC-CAGCcGCAGCUCCCGUAaaAGcg -5'
12927 5' -54.2 NC_003387.1 + 50987 0.67 0.70136
Target:  5'- ----gCGGC--CGGGGGCGUUUUCGUu -3'
miRNA:   3'- uaccaGCCGcaGCUCCCGUAAAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.