miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12927 5' -54.2 NC_003387.1 + 616 0.66 0.733823
Target:  5'- -aGGcCGaGCagggCGAGGGCAgcgUCGCc -3'
miRNA:   3'- uaCCaGC-CGca--GCUCCCGUaaaAGCG- -5'
12927 5' -54.2 NC_003387.1 + 1753 0.69 0.590344
Target:  5'- -cGGccgcuaUCGGC-UCGGGGGCGc-UUCGCg -3'
miRNA:   3'- uaCC------AGCCGcAGCUCCCGUaaAAGCG- -5'
12927 5' -54.2 NC_003387.1 + 2357 0.66 0.723091
Target:  5'- --cGUCGGCGUCGAGcGCcacguaCGCg -3'
miRNA:   3'- uacCAGCCGCAGCUCcCGuaaaa-GCG- -5'
12927 5' -54.2 NC_003387.1 + 4147 0.69 0.546387
Target:  5'- -gGGUCGGCGagGcGGGCGUcgaUGCa -3'
miRNA:   3'- uaCCAGCCGCagCuCCCGUAaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 5696 0.71 0.452136
Target:  5'- gGUGG-CGGCgGUCaAGGGCGUgccCGCg -3'
miRNA:   3'- -UACCaGCCG-CAGcUCCCGUAaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 8091 0.68 0.657159
Target:  5'- -cGGUCGGCGccaacccgccCGAGGGCGagcccagcUCGUa -3'
miRNA:   3'- uaCCAGCCGCa---------GCUCCCGUaaa-----AGCG- -5'
12927 5' -54.2 NC_003387.1 + 10011 0.7 0.53555
Target:  5'- -aGGUCGGCGUUGccGGUAUcggUCGg -3'
miRNA:   3'- uaCCAGCCGCAGCucCCGUAaa-AGCg -5'
12927 5' -54.2 NC_003387.1 + 10428 0.66 0.754961
Target:  5'- -cGGcucgCGGCuGUCGGcGGGCAUcgacagCGCg -3'
miRNA:   3'- uaCCa---GCCG-CAGCU-CCCGUAaaa---GCG- -5'
12927 5' -54.2 NC_003387.1 + 11276 0.66 0.765343
Target:  5'- -aGGgCGGCGUC-AGGGCcg---CGCc -3'
miRNA:   3'- uaCCaGCCGCAGcUCCCGuaaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 13659 0.66 0.723091
Target:  5'- -cGGcUCGGuCGcCGAGGGCGccgUCGa -3'
miRNA:   3'- uaCC-AGCC-GCaGCUCCCGUaaaAGCg -5'
12927 5' -54.2 NC_003387.1 + 14644 0.69 0.590344
Target:  5'- -aGGgcaaGGC--CGAGGGCGUUaUCGCg -3'
miRNA:   3'- uaCCag--CCGcaGCUCCCGUAAaAGCG- -5'
12927 5' -54.2 NC_003387.1 + 16063 0.73 0.362226
Target:  5'- -aGGUCGGCGagccggugaugccacUCGGGGGCGccgUCGg -3'
miRNA:   3'- uaCCAGCCGC---------------AGCUCCCGUaaaAGCg -5'
12927 5' -54.2 NC_003387.1 + 16190 0.66 0.773548
Target:  5'- -aGG-CGGCGUCGgugcugucGGGGCucagccugCGCu -3'
miRNA:   3'- uaCCaGCCGCAGC--------UCCCGuaaaa---GCG- -5'
12927 5' -54.2 NC_003387.1 + 18407 0.66 0.723091
Target:  5'- -gGGUCGGC--CGcGGGCAg---CGCg -3'
miRNA:   3'- uaCCAGCCGcaGCuCCCGUaaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 19587 0.66 0.754961
Target:  5'- cUGcUCGGCGUCGAcguGuGGCAg--UCGUu -3'
miRNA:   3'- uACcAGCCGCAGCU---C-CCGUaaaAGCG- -5'
12927 5' -54.2 NC_003387.1 + 20166 0.71 0.482645
Target:  5'- --cGagGGCGUCGAGGGCGcggUUgaugCGCu -3'
miRNA:   3'- uacCagCCGCAGCUCCCGUa--AAa---GCG- -5'
12927 5' -54.2 NC_003387.1 + 21931 0.69 0.601445
Target:  5'- uGUGGugcUCGGCGgCGGGGGCGg---CGg -3'
miRNA:   3'- -UACC---AGCCGCaGCUCCCGUaaaaGCg -5'
12927 5' -54.2 NC_003387.1 + 22051 0.7 0.493035
Target:  5'- -cGGUgcgacCGG-GUCGGGGGCGUUUcUCGUu -3'
miRNA:   3'- uaCCA-----GCCgCAGCUCCCGUAAA-AGCG- -5'
12927 5' -54.2 NC_003387.1 + 22683 0.71 0.482645
Target:  5'- cGUGGgCGGUGUCGAcGGCGg---CGCu -3'
miRNA:   3'- -UACCaGCCGCAGCUcCCGUaaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 23195 1.11 0.000915
Target:  5'- aAUGGUCGGCGUCGAGGGCAUUUUCGCa -3'
miRNA:   3'- -UACCAGCCGCAGCUCCCGUAAAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.