miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12927 5' -54.2 NC_003387.1 + 30685 0.76 0.23309
Target:  5'- -cGGUCGcacCGgCGGGGGCGUUUUCGUg -3'
miRNA:   3'- uaCCAGCc--GCaGCUCCCGUAAAAGCG- -5'
12927 5' -54.2 NC_003387.1 + 616 0.66 0.733823
Target:  5'- -aGGcCGaGCagggCGAGGGCAgcgUCGCc -3'
miRNA:   3'- uaCCaGC-CGca--GCUCCCGUaaaAGCG- -5'
12927 5' -54.2 NC_003387.1 + 10428 0.66 0.754961
Target:  5'- -cGGcucgCGGCuGUCGGcGGGCAUcgacagCGCg -3'
miRNA:   3'- uaCCa---GCCG-CAGCU-CCCGUAaaa---GCG- -5'
12927 5' -54.2 NC_003387.1 + 19587 0.66 0.754961
Target:  5'- cUGcUCGGCGUCGAcguGuGGCAg--UCGUu -3'
miRNA:   3'- uACcAGCCGCAGCU---C-CCGUaaaAGCG- -5'
12927 5' -54.2 NC_003387.1 + 25889 0.71 0.46219
Target:  5'- cUGGUgcucccCGGCGUCcAGGGCGg---CGCg -3'
miRNA:   3'- uACCA------GCCGCAGcUCCCGUaaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 50900 0.71 0.46219
Target:  5'- -gGcGUCGaCGUCGAGGGCAUggUCa- -3'
miRNA:   3'- uaC-CAGCcGCAGCUCCCGUAaaAGcg -5'
12927 5' -54.2 NC_003387.1 + 28356 0.69 0.568259
Target:  5'- uUGGaaGGCGUCGugucgcAGGGCGgg--CGCa -3'
miRNA:   3'- uACCagCCGCAGC------UCCCGUaaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 14644 0.69 0.590344
Target:  5'- -aGGgcaaGGC--CGAGGGCGUUaUCGCg -3'
miRNA:   3'- uaCCag--CCGcaGCUCCCGUAAaAGCG- -5'
12927 5' -54.2 NC_003387.1 + 8091 0.68 0.657159
Target:  5'- -cGGUCGGCGccaacccgccCGAGGGCGagcccagcUCGUa -3'
miRNA:   3'- uaCCAGCCGCa---------GCUCCCGUaaa-----AGCG- -5'
12927 5' -54.2 NC_003387.1 + 13659 0.66 0.723091
Target:  5'- -cGGcUCGGuCGcCGAGGGCGccgUCGa -3'
miRNA:   3'- uaCC-AGCC-GCaGCUCCCGUaaaAGCg -5'
12927 5' -54.2 NC_003387.1 + 50987 0.67 0.70136
Target:  5'- ----gCGGC--CGGGGGCGUUUUCGUu -3'
miRNA:   3'- uaccaGCCGcaGCUCCCGUAAAAGCG- -5'
12927 5' -54.2 NC_003387.1 + 24662 0.68 0.612573
Target:  5'- -aGGUCGccaGCGcCGAGGGUGac-UCGCg -3'
miRNA:   3'- uaCCAGC---CGCaGCUCCCGUaaaAGCG- -5'
12927 5' -54.2 NC_003387.1 + 34045 0.74 0.30189
Target:  5'- cUGGUCGGCGUguGGGGCGgccuaagCGCc -3'
miRNA:   3'- uACCAGCCGCAgcUCCCGUaaaa---GCG- -5'
12927 5' -54.2 NC_003387.1 + 49492 0.67 0.712266
Target:  5'- -cGGUgcgcccgccCGGCGUCGAcgugucgcaaugGGGCuggacgUCGCa -3'
miRNA:   3'- uaCCA---------GCCGCAGCU------------CCCGuaaa--AGCG- -5'
12927 5' -54.2 NC_003387.1 + 45235 0.74 0.325376
Target:  5'- cGUGGUCGGaGUCGAuGGGCugga-CGCg -3'
miRNA:   3'- -UACCAGCCgCAGCU-CCCGuaaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 21931 0.69 0.601445
Target:  5'- uGUGGugcUCGGCGgCGGGGGCGg---CGg -3'
miRNA:   3'- -UACC---AGCCGCaGCUCCCGUaaaaGCg -5'
12927 5' -54.2 NC_003387.1 + 38506 0.66 0.720933
Target:  5'- --cGUgGGCGUgCGAGGGCGgcaagugagCGCc -3'
miRNA:   3'- uacCAgCCGCA-GCUCCCGUaaaa-----GCG- -5'
12927 5' -54.2 NC_003387.1 + 47924 0.66 0.744451
Target:  5'- cUGGUCGGCGgcaGGcauGGGCAcga-CGCc -3'
miRNA:   3'- uACCAGCCGCag-CU---CCCGUaaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 5696 0.71 0.452136
Target:  5'- gGUGG-CGGCgGUCaAGGGCGUgccCGCg -3'
miRNA:   3'- -UACCaGCCG-CAGcUCCCGUAaaaGCG- -5'
12927 5' -54.2 NC_003387.1 + 45059 0.7 0.52479
Target:  5'- -aGGUCGccgagcGCGUCGAGGGCcgUccugggccggugUUCGg -3'
miRNA:   3'- uaCCAGC------CGCAGCUCCCGuaA------------AAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.