miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12929 3' -59.1 NC_003387.1 + 11283 0.68 0.398221
Target:  5'- cGUCAggGCCGCGCCGgugACCUCGGGuagcUCGa -3'
miRNA:   3'- cCGGU--UGGCGCGGC---UGGGGCUU----AGCa -5'
12929 3' -59.1 NC_003387.1 + 11404 0.78 0.095432
Target:  5'- cGCUGGCCGCGaUCGGCCCCGAggugcuGUCGUc -3'
miRNA:   3'- cCGGUUGGCGC-GGCUGGGGCU------UAGCA- -5'
12929 3' -59.1 NC_003387.1 + 11814 0.67 0.482694
Target:  5'- aGGCCAccgcccgaGCCGCGaucgCGGCCuuGAuuagGUCGc -3'
miRNA:   3'- -CCGGU--------UGGCGCg---GCUGGggCU----UAGCa -5'
12929 3' -59.1 NC_003387.1 + 14938 0.68 0.434617
Target:  5'- cGGCgCAGCgGCGCau-CCCCGGugguAUCGg -3'
miRNA:   3'- -CCG-GUUGgCGCGgcuGGGGCU----UAGCa -5'
12929 3' -59.1 NC_003387.1 + 16148 0.66 0.533193
Target:  5'- gGGCaCcGCCcCGUCGAUCCCGAGU-GUg -3'
miRNA:   3'- -CCG-GuUGGcGCGGCUGGGGCUUAgCA- -5'
12929 3' -59.1 NC_003387.1 + 16577 0.69 0.378198
Target:  5'- cGGCCGACCGCcucGUcggggcucacucgaCGACCUCGAaccgcGUCGa -3'
miRNA:   3'- -CCGGUUGGCG---CG--------------GCUGGGGCU-----UAGCa -5'
12929 3' -59.1 NC_003387.1 + 16988 0.75 0.151354
Target:  5'- gGGCgGGCUGCGUcauCGACCCCGAG-CGg -3'
miRNA:   3'- -CCGgUUGGCGCG---GCUGGGGCUUaGCa -5'
12929 3' -59.1 NC_003387.1 + 17601 0.74 0.168291
Target:  5'- uGGCC-GCCGCuugagcaggccGCCGACCUCGAAcCGUu -3'
miRNA:   3'- -CCGGuUGGCG-----------CGGCUGGGGCUUaGCA- -5'
12929 3' -59.1 NC_003387.1 + 18289 0.67 0.453523
Target:  5'- -cUCGACCaGCGCCGACCCgGccgCGg -3'
miRNA:   3'- ccGGUUGG-CGCGGCUGGGgCuuaGCa -5'
12929 3' -59.1 NC_003387.1 + 18342 0.67 0.462176
Target:  5'- cGCCGuuuccguugucGCCGUuggguuuGCCGACCUCGAccacGUCGa -3'
miRNA:   3'- cCGGU-----------UGGCG-------CGGCUGGGGCU----UAGCa -5'
12929 3' -59.1 NC_003387.1 + 18656 0.66 0.502636
Target:  5'- cGGCCGcCCGCuaaCCGAUUUCGAGuUCGUc -3'
miRNA:   3'- -CCGGUuGGCGc--GGCUGGGGCUU-AGCA- -5'
12929 3' -59.1 NC_003387.1 + 18679 0.67 0.453523
Target:  5'- aGGCCGcCCcacaCGCCGACCaggugCGggUCGc -3'
miRNA:   3'- -CCGGUuGGc---GCGGCUGGg----GCuuAGCa -5'
12929 3' -59.1 NC_003387.1 + 19307 0.66 0.533193
Target:  5'- aGGCaCAGCCGCacaaCGGCCUCGcg-CGUg -3'
miRNA:   3'- -CCG-GUUGGCGcg--GCUGGGGCuuaGCA- -5'
12929 3' -59.1 NC_003387.1 + 19543 0.68 0.416176
Target:  5'- uGCCGAUCGCGCuCGucgagaACCUguCGAGUCGg -3'
miRNA:   3'- cCGGUUGGCGCG-GC------UGGG--GCUUAGCa -5'
12929 3' -59.1 NC_003387.1 + 19999 0.73 0.191836
Target:  5'- aGGCC-ACCGCGCCGugcgccgugaaGCCCUGuGUCa- -3'
miRNA:   3'- -CCGGuUGGCGCGGC-----------UGGGGCuUAGca -5'
12929 3' -59.1 NC_003387.1 + 20106 0.67 0.463143
Target:  5'- gGGUCAGcgcccCCGCGgCGAgCCCGAgcaggAUCGa -3'
miRNA:   3'- -CCGGUU-----GGCGCgGCUgGGGCU-----UAGCa -5'
12929 3' -59.1 NC_003387.1 + 20551 0.74 0.172783
Target:  5'- cGUCGGCUGCGCCGauaacGCCCCGGugggCGUg -3'
miRNA:   3'- cCGGUUGGCGCGGC-----UGGGGCUua--GCA- -5'
12929 3' -59.1 NC_003387.1 + 21687 0.68 0.434617
Target:  5'- cGCCGguGCCGUGCUGgccgccGCCCCGGcgCa- -3'
miRNA:   3'- cCGGU--UGGCGCGGC------UGGGGCUuaGca -5'
12929 3' -59.1 NC_003387.1 + 21696 0.71 0.271479
Target:  5'- uGGCCGccucggcgagcgcgGcCCGCGCCGACCU--GGUCGUg -3'
miRNA:   3'- -CCGGU--------------U-GGCGCGGCUGGGgcUUAGCA- -5'
12929 3' -59.1 NC_003387.1 + 22290 0.66 0.533193
Target:  5'- cGGCC-ACCGCcUCGGCCUCGGuuUCa- -3'
miRNA:   3'- -CCGGuUGGCGcGGCUGGGGCUu-AGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.