miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12929 3' -59.1 NC_003387.1 + 982 0.66 0.502636
Target:  5'- uGCCGccGCCgagGCGCCGA-CCgGggUCGg -3'
miRNA:   3'- cCGGU--UGG---CGCGGCUgGGgCuuAGCa -5'
12929 3' -59.1 NC_003387.1 + 1349 0.71 0.287203
Target:  5'- cGCCGACgagGaCGCCGACCCCGA--CGa -3'
miRNA:   3'- cCGGUUGg--C-GCGGCUGGGGCUuaGCa -5'
12929 3' -59.1 NC_003387.1 + 3089 0.66 0.502636
Target:  5'- gGGCCAAgCuCGCCGACCggcUCGuaAAUCGg -3'
miRNA:   3'- -CCGGUUgGcGCGGCUGG---GGC--UUAGCa -5'
12929 3' -59.1 NC_003387.1 + 3466 0.68 0.416176
Target:  5'- cGGUCGAUgCGCGUC-ACCCCGGcGUCGa -3'
miRNA:   3'- -CCGGUUG-GCGCGGcUGGGGCU-UAGCa -5'
12929 3' -59.1 NC_003387.1 + 3956 0.68 0.416176
Target:  5'- aGCUGGCUGCGCCGAgCaCCGcGUgCGUg -3'
miRNA:   3'- cCGGUUGGCGCGGCUgG-GGCuUA-GCA- -5'
12929 3' -59.1 NC_003387.1 + 4203 0.69 0.347436
Target:  5'- cGGCC-ACCGCGUguCGGCCCagGAcugGUCGa -3'
miRNA:   3'- -CCGGuUGGCGCG--GCUGGGg-CU---UAGCa -5'
12929 3' -59.1 NC_003387.1 + 4443 0.68 0.398221
Target:  5'- cGCCGAgcCCGCGCCGAaggCCGAGcCGa -3'
miRNA:   3'- cCGGUU--GGCGCGGCUgg-GGCUUaGCa -5'
12929 3' -59.1 NC_003387.1 + 4488 0.71 0.266832
Target:  5'- cGGCCGACCGgGCgCGACa-CG-AUCGUg -3'
miRNA:   3'- -CCGGUUGGCgCG-GCUGggGCuUAGCA- -5'
12929 3' -59.1 NC_003387.1 + 4490 0.71 0.27349
Target:  5'- aGGCCGAgcCCGCGgaGGCCCCGc-UCGa -3'
miRNA:   3'- -CCGGUU--GGCGCggCUGGGGCuuAGCa -5'
12929 3' -59.1 NC_003387.1 + 4566 0.71 0.266832
Target:  5'- uGCgCGACCGCGCgGGCCUCGGuggCGc -3'
miRNA:   3'- cCG-GUUGGCGCGgCUGGGGCUua-GCa -5'
12929 3' -59.1 NC_003387.1 + 4681 0.66 0.543529
Target:  5'- gGGUgAACUGCuuGCCGugCCCGca-CGUg -3'
miRNA:   3'- -CCGgUUGGCG--CGGCugGGGCuuaGCA- -5'
12929 3' -59.1 NC_003387.1 + 5772 0.74 0.182089
Target:  5'- -aCCGGCCGCGCUcGCCgCGGAUCGa -3'
miRNA:   3'- ccGGUUGGCGCGGcUGGgGCUUAGCa -5'
12929 3' -59.1 NC_003387.1 + 7478 0.67 0.482694
Target:  5'- -uCCAGCCGCGUccagcccauCGACUCCGAccacgccacgAUCGg -3'
miRNA:   3'- ccGGUUGGCGCG---------GCUGGGGCU----------UAGCa -5'
12929 3' -59.1 NC_003387.1 + 8325 0.74 0.165646
Target:  5'- cGUCAGCCGCggcgagcuucgccucGUCGACCaCCGggUCGUc -3'
miRNA:   3'- cCGGUUGGCG---------------CGGCUGG-GGCuuAGCA- -5'
12929 3' -59.1 NC_003387.1 + 8334 0.75 0.135979
Target:  5'- cGGCCGACCuCGaCGACCCCGAcgUGc -3'
miRNA:   3'- -CCGGUUGGcGCgGCUGGGGCUuaGCa -5'
12929 3' -59.1 NC_003387.1 + 8637 0.66 0.543529
Target:  5'- cGGCCucGCCGU-CUGACCUCGAAacCGUu -3'
miRNA:   3'- -CCGGu-UGGCGcGGCUGGGGCUUa-GCA- -5'
12929 3' -59.1 NC_003387.1 + 8882 0.66 0.519864
Target:  5'- uGGUgcACCGCcCCGACCUCGGccucgcccucgccgAUCGUg -3'
miRNA:   3'- -CCGguUGGCGcGGCUGGGGCU--------------UAGCA- -5'
12929 3' -59.1 NC_003387.1 + 9460 0.68 0.425337
Target:  5'- cGCCAcguucgacGCCGaCGauuuCGACCCCGAGUaCGg -3'
miRNA:   3'- cCGGU--------UGGC-GCg---GCUGGGGCUUA-GCa -5'
12929 3' -59.1 NC_003387.1 + 10333 0.67 0.463143
Target:  5'- -aUCAGCCGCggcgucgauacgGCCGACCCCGGuaaGg -3'
miRNA:   3'- ccGGUUGGCG------------CGGCUGGGGCUuagCa -5'
12929 3' -59.1 NC_003387.1 + 10986 0.7 0.305831
Target:  5'- cGGCCAGCCGggugacguccucgGCCGuGCCCCGGccgccuucGUCGg -3'
miRNA:   3'- -CCGGUUGGCg------------CGGC-UGGGGCU--------UAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.