Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12929 | 3' | -59.1 | NC_003387.1 | + | 23511 | 1.09 | 0.0005 |
Target: 5'- cGGCCAACCGCGCCGACCCCGAAUCGUu -3' miRNA: 3'- -CCGGUUGGCGCGGCUGGGGCUUAGCA- -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 21696 | 0.71 | 0.271479 |
Target: 5'- uGGCCGccucggcgagcgcgGcCCGCGCCGACCU--GGUCGUg -3' miRNA: 3'- -CCGGU--------------U-GGCGCGGCUGGGgcUUAGCA- -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 1349 | 0.71 | 0.287203 |
Target: 5'- cGCCGACgagGaCGCCGACCCCGA--CGa -3' miRNA: 3'- cCGGUUGg--C-GCGGCUGGGGCUuaGCa -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 8637 | 0.66 | 0.543529 |
Target: 5'- cGGCCucGCCGU-CUGACCUCGAAacCGUu -3' miRNA: 3'- -CCGGu-UGGCGcGGCUGGGGCUUa-GCA- -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 27687 | 0.76 | 0.122052 |
Target: 5'- uGGCgCGaguGCUGCGCCGACCCCGAc---- -3' miRNA: 3'- -CCG-GU---UGGCGCGGCUGGGGCUuagca -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 25577 | 0.75 | 0.135979 |
Target: 5'- -cCCGGCgGCGCCGACCCCGg--CGg -3' miRNA: 3'- ccGGUUGgCGCGGCUGGGGCuuaGCa -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 16988 | 0.75 | 0.151354 |
Target: 5'- gGGCgGGCUGCGUcauCGACCCCGAG-CGg -3' miRNA: 3'- -CCGgUUGGCGCG---GCUGGGGCUUaGCa -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 22467 | 0.75 | 0.155437 |
Target: 5'- -cCCGACCccgGCGCCGACCCCGA--CGa -3' miRNA: 3'- ccGGUUGG---CGCGGCUGGGGCUuaGCa -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 20551 | 0.74 | 0.172783 |
Target: 5'- cGUCGGCUGCGCCGauaacGCCCCGGugggCGUg -3' miRNA: 3'- cCGGUUGGCGCGGC-----UGGGGCUua--GCA- -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 34252 | 0.71 | 0.253911 |
Target: 5'- cGCuCGACCG-GCUGAUCgCCGAGUCGg -3' miRNA: 3'- cCG-GUUGGCgCGGCUGG-GGCUUAGCa -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 43002 | 0.72 | 0.218221 |
Target: 5'- cGCCGACCcguacGCGCUGAacaCCCCGAgcgguGUCGUc -3' miRNA: 3'- cCGGUUGG-----CGCGGCU---GGGGCU-----UAGCA- -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 30569 | 0.74 | 0.168291 |
Target: 5'- cGGCCggUaCGCGCCGugCCgCGAGUgCGg -3' miRNA: 3'- -CCGGuuG-GCGCGGCugGG-GCUUA-GCa -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 42753 | 0.8 | 0.068397 |
Target: 5'- cGGaUCGGCUGCGCUGguGCCCCGAGUCGg -3' miRNA: 3'- -CC-GGUUGGCGCGGC--UGGGGCUUAGCa -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 45385 | 0.72 | 0.218221 |
Target: 5'- cGGUUAGCUGCGcCCGGCcgCCCGAgccgAUCGUg -3' miRNA: 3'- -CCGGUUGGCGC-GGCUG--GGGCU----UAGCA- -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 32013 | 0.79 | 0.077757 |
Target: 5'- aGGCCGcucucgaaucguuCCGCGUCGcCCCCGAGUCGg -3' miRNA: 3'- -CCGGUu------------GGCGCGGCuGGGGCUUAGCa -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 17601 | 0.74 | 0.168291 |
Target: 5'- uGGCC-GCCGCuugagcaggccGCCGACCUCGAAcCGUu -3' miRNA: 3'- -CCGGuUGGCG-----------CGGCUGGGGCUUaGCA- -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 32866 | 0.71 | 0.253911 |
Target: 5'- cGCCGACUGCGCCGACUgCCagcUCGa -3' miRNA: 3'- cCGGUUGGCGCGGCUGG-GGcuuAGCa -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 4490 | 0.71 | 0.27349 |
Target: 5'- aGGCCGAgcCCGCGgaGGCCCCGc-UCGa -3' miRNA: 3'- -CCGGUU--GGCGCggCUGGGGCuuAGCa -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 11404 | 0.78 | 0.095432 |
Target: 5'- cGCUGGCCGCGaUCGGCCCCGAggugcuGUCGUc -3' miRNA: 3'- cCGGUUGGCGC-GGCUGGGGCU------UAGCA- -5' |
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12929 | 3' | -59.1 | NC_003387.1 | + | 8334 | 0.75 | 0.135979 |
Target: 5'- cGGCCGACCuCGaCGACCCCGAcgUGc -3' miRNA: 3'- -CCGGUUGGcGCgGCUGGGGCUuaGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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