miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12929 5' -52.5 NC_003387.1 + 48629 0.67 0.857081
Target:  5'- aCACGGCgccgCGGGucgCGAGCauGCGGCa -3'
miRNA:   3'- cGUGCUGa---GCCUua-GCUUGc-UGCCGg -5'
12929 5' -52.5 NC_003387.1 + 41186 0.67 0.857081
Target:  5'- aGCACGGCcUGGugcgCGAacaggGCGACacgcaGGCCg -3'
miRNA:   3'- -CGUGCUGaGCCuua-GCU-----UGCUG-----CCGG- -5'
12929 5' -52.5 NC_003387.1 + 23477 0.67 0.857081
Target:  5'- -aACGACcCGccguUCGAGCGGCGGUUc -3'
miRNA:   3'- cgUGCUGaGCcuu-AGCUUGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 34031 0.67 0.857081
Target:  5'- uGCGCGACcCGcaccuGGUCGGcguguGgGGCGGCCu -3'
miRNA:   3'- -CGUGCUGaGCc----UUAGCU-----UgCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 13178 0.67 0.856247
Target:  5'- aGCGCGACcUGGccgacgcGAUCGAgaaGCG-CGGCa -3'
miRNA:   3'- -CGUGCUGaGCC-------UUAGCU---UGCuGCCGg -5'
12929 5' -52.5 NC_003387.1 + 5439 0.67 0.848637
Target:  5'- --uCGACcgaGGGcgCcGACGGCGGCCa -3'
miRNA:   3'- cguGCUGag-CCUuaGcUUGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 40368 0.67 0.848637
Target:  5'- uCGCGGC-CGGGGccaagggccUCGAcguCGGCGGCg -3'
miRNA:   3'- cGUGCUGaGCCUU---------AGCUu--GCUGCCGg -5'
12929 5' -52.5 NC_003387.1 + 30082 0.67 0.848636
Target:  5'- aGCAUGcGCUCaGucGUCGGcgGGCGGCCa -3'
miRNA:   3'- -CGUGC-UGAGcCu-UAGCUugCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 23875 0.67 0.848636
Target:  5'- aGUcCGACcCGcAGUCGAACGuCGGCg -3'
miRNA:   3'- -CGuGCUGaGCcUUAGCUUGCuGCCGg -5'
12929 5' -52.5 NC_003387.1 + 21697 0.67 0.839964
Target:  5'- gGC-CGcCUCGG---CGAGCG-CGGCCc -3'
miRNA:   3'- -CGuGCuGAGCCuuaGCUUGCuGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 23293 0.67 0.839964
Target:  5'- -aGCGACcgcgCGGGccgcuGCGGCGGCCu -3'
miRNA:   3'- cgUGCUGa---GCCUuagcuUGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 41009 0.67 0.839964
Target:  5'- gGCGuCGACggcCGG-GUCGAcugcguCGACGGCg -3'
miRNA:   3'- -CGU-GCUGa--GCCuUAGCUu-----GCUGCCGg -5'
12929 5' -52.5 NC_003387.1 + 13227 0.67 0.839964
Target:  5'- aGCuuGuACUCGGggUCGcuuguGCGcAUGGCg -3'
miRNA:   3'- -CGugC-UGAGCCuuAGCu----UGC-UGCCGg -5'
12929 5' -52.5 NC_003387.1 + 31009 0.67 0.839964
Target:  5'- cCACGACcaggUCGGcg-CGGGCcgcgcucgccgaGGCGGCCa -3'
miRNA:   3'- cGUGCUG----AGCCuuaGCUUG------------CUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 24100 0.67 0.831072
Target:  5'- cCAUGACUCaGGGAUgCGcaccuCGACGuGCCc -3'
miRNA:   3'- cGUGCUGAG-CCUUA-GCuu---GCUGC-CGG- -5'
12929 5' -52.5 NC_003387.1 + 5301 0.67 0.830171
Target:  5'- uGCAUGAggcccucCUCGGGcUCgGGGCGG-GGCCg -3'
miRNA:   3'- -CGUGCU-------GAGCCUuAG-CUUGCUgCCGG- -5'
12929 5' -52.5 NC_003387.1 + 29238 0.67 0.830171
Target:  5'- cGCACGAUccCGGccgacaaGGUCGAgcaguacgagGCGAUGGCa -3'
miRNA:   3'- -CGUGCUGa-GCC-------UUAGCU----------UGCUGCCGg -5'
12929 5' -52.5 NC_003387.1 + 5500 0.67 0.821971
Target:  5'- aGCuuGACaaGGuGAUCGAGCaGCGGCUc -3'
miRNA:   3'- -CGugCUGagCC-UUAGCUUGcUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 43161 0.67 0.821971
Target:  5'- uGCGCGuGCUgGcGAAUCcaccccGGCGGCGGCUu -3'
miRNA:   3'- -CGUGC-UGAgC-CUUAGc-----UUGCUGCCGG- -5'
12929 5' -52.5 NC_003387.1 + 8041 0.67 0.821971
Target:  5'- cGCGCGagccuaucuGCUCGa---CGAGCuGGCGGCCc -3'
miRNA:   3'- -CGUGC---------UGAGCcuuaGCUUG-CUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.