miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12933 3' -54 NC_003387.1 + 9688 0.69 0.579719
Target:  5'- cGUCgAGGCGuggGGC-CGUGACGGCG-GGCu -3'
miRNA:   3'- -CAG-UCCGU---UCGuGCGCUGCUGUaCUG- -5'
12933 3' -54 NC_003387.1 + 3946 0.69 0.567501
Target:  5'- aUCAgcGGCGAGCugGCuGCGccgagcaccgcguGCGUGACg -3'
miRNA:   3'- cAGU--CCGUUCGugCGcUGC-------------UGUACUG- -5'
12933 3' -54 NC_003387.1 + 164 0.69 0.557554
Target:  5'- --uGGGCcuGCugGcCGACGGCAaGACg -3'
miRNA:   3'- cagUCCGuuCGugC-GCUGCUGUaCUG- -5'
12933 3' -54 NC_003387.1 + 41294 0.69 0.557554
Target:  5'- -gCGGGCAcgAGCAC-CGACGACA--GCa -3'
miRNA:   3'- caGUCCGU--UCGUGcGCUGCUGUacUG- -5'
12933 3' -54 NC_003387.1 + 2833 0.7 0.535637
Target:  5'- cGUCAacGGCc-GCgACGcCGACGACAUGAUc -3'
miRNA:   3'- -CAGU--CCGuuCG-UGC-GCUGCUGUACUG- -5'
12933 3' -54 NC_003387.1 + 43200 0.7 0.534549
Target:  5'- -gCuGGcCGGGUACGCGGCGAUcggcgagGUGACg -3'
miRNA:   3'- caGuCC-GUUCGUGCGCUGCUG-------UACUG- -5'
12933 3' -54 NC_003387.1 + 28005 0.7 0.524791
Target:  5'- uUC-GGCGAGCACGCGcuugGCGAgCuUGGCg -3'
miRNA:   3'- cAGuCCGUUCGUGCGC----UGCU-GuACUG- -5'
12933 3' -54 NC_003387.1 + 45289 0.7 0.514029
Target:  5'- cGUCGGGCGGGCAUcuGUGGCuuUcgGACg -3'
miRNA:   3'- -CAGUCCGUUCGUG--CGCUGcuGuaCUG- -5'
12933 3' -54 NC_003387.1 + 10928 0.7 0.512958
Target:  5'- -cCAGGCGugcgccaggucgcGGCACGCGccCGGCuUGACg -3'
miRNA:   3'- caGUCCGU-------------UCGUGCGCu-GCUGuACUG- -5'
12933 3' -54 NC_003387.1 + 35186 0.7 0.482315
Target:  5'- uUCGGGCcgaucAGCACGUcgGugGugAUGACc -3'
miRNA:   3'- cAGUCCGu----UCGUGCG--CugCugUACUG- -5'
12933 3' -54 NC_003387.1 + 25684 0.7 0.482315
Target:  5'- cUCGGGCAGuaACGaCGAgaaggccaacgcCGACAUGACg -3'
miRNA:   3'- cAGUCCGUUcgUGC-GCU------------GCUGUACUG- -5'
12933 3' -54 NC_003387.1 + 4294 0.7 0.482315
Target:  5'- -gCGGGCGAGCAgcgcacCGCGAccCGGCAgUGGCu -3'
miRNA:   3'- caGUCCGUUCGU------GCGCU--GCUGU-ACUG- -5'
12933 3' -54 NC_003387.1 + 50339 0.71 0.471954
Target:  5'- uUCAGGCc-GCcCGCGGCaACGUGACc -3'
miRNA:   3'- cAGUCCGuuCGuGCGCUGcUGUACUG- -5'
12933 3' -54 NC_003387.1 + 21528 0.71 0.471954
Target:  5'- uUCAGGCGcGCGuCGCGuuCGACGUGcCg -3'
miRNA:   3'- cAGUCCGUuCGU-GCGCu-GCUGUACuG- -5'
12933 3' -54 NC_003387.1 + 35249 0.71 0.471954
Target:  5'- ----cGCAAGUACGcCGACGACAacUGGCg -3'
miRNA:   3'- cagucCGUUCGUGC-GCUGCUGU--ACUG- -5'
12933 3' -54 NC_003387.1 + 38055 0.71 0.460689
Target:  5'- aUCGGGCGguggcugagcgAGCgccgcgucacuguGCGCGGCGGCcUGACg -3'
miRNA:   3'- cAGUCCGU-----------UCG-------------UGCGCUGCUGuACUG- -5'
12933 3' -54 NC_003387.1 + 43099 0.71 0.441572
Target:  5'- -aCGGGCGccgGGUacgaGCGCGACGGCGcGGCg -3'
miRNA:   3'- caGUCCGU---UCG----UGCGCUGCUGUaCUG- -5'
12933 3' -54 NC_003387.1 + 16041 0.71 0.431693
Target:  5'- aUC-GGCGucaCugGCGACGACAUGAUc -3'
miRNA:   3'- cAGuCCGUuc-GugCGCUGCUGUACUG- -5'
12933 3' -54 NC_003387.1 + 12451 0.71 0.431693
Target:  5'- --gAGGUucGCugGCGGCGGCcUGGCc -3'
miRNA:   3'- cagUCCGuuCGugCGCUGCUGuACUG- -5'
12933 3' -54 NC_003387.1 + 30750 0.72 0.421944
Target:  5'- cGUCGGGC-AGCAcCGUGuCGgGCGUGACc -3'
miRNA:   3'- -CAGUCCGuUCGU-GCGCuGC-UGUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.