miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12933 3' -54 NC_003387.1 + 13457 0.79 0.14088
Target:  5'- uGUCGGGCAAGgGcCGCGACGGCGaggagGGCa -3'
miRNA:   3'- -CAGUCCGUUCgU-GCGCUGCUGUa----CUG- -5'
12933 3' -54 NC_003387.1 + 13909 0.66 0.73544
Target:  5'- cGUCGGGU-GGCGCcCGAuCGGCAccaUGACg -3'
miRNA:   3'- -CAGUCCGuUCGUGcGCU-GCUGU---ACUG- -5'
12933 3' -54 NC_003387.1 + 16041 0.71 0.431693
Target:  5'- aUC-GGCGucaCugGCGACGACAUGAUc -3'
miRNA:   3'- cAGuCCGUuc-GugCGCUGCUGUACUG- -5'
12933 3' -54 NC_003387.1 + 17587 0.66 0.76715
Target:  5'- uGUCGuGCGGcCACGgcuuaGGCGGCAUGACg -3'
miRNA:   3'- -CAGUcCGUUcGUGCg----CUGCUGUACUG- -5'
12933 3' -54 NC_003387.1 + 18433 0.67 0.702755
Target:  5'- cUCGGGCAGccacguGUACGCG-CGcacCGUGACg -3'
miRNA:   3'- cAGUCCGUU------CGUGCGCuGCu--GUACUG- -5'
12933 3' -54 NC_003387.1 + 19951 0.66 0.756709
Target:  5'- cGUCGGGCAaaGGUAcCGCGuCGACuucACa -3'
miRNA:   3'- -CAGUCCGU--UCGU-GCGCuGCUGuacUG- -5'
12933 3' -54 NC_003387.1 + 20212 0.67 0.6917
Target:  5'- -cCGGGCGuGCACGCaGCGGCAg--- -3'
miRNA:   3'- caGUCCGUuCGUGCGcUGCUGUacug -5'
12933 3' -54 NC_003387.1 + 21528 0.71 0.471954
Target:  5'- uUCAGGCGcGCGuCGCGuuCGACGUGcCg -3'
miRNA:   3'- cAGUCCGUuCGU-GCGCu-GCUGUACuG- -5'
12933 3' -54 NC_003387.1 + 22010 0.67 0.6917
Target:  5'- aUCAGGCcgugacgcuaGAGCGCgGCGuCGACAuuccgugggcggUGGCg -3'
miRNA:   3'- cAGUCCG----------UUCGUG-CGCuGCUGU------------ACUG- -5'
12933 3' -54 NC_003387.1 + 22441 0.66 0.756709
Target:  5'- -cCAGGCGcgGGC-CGCGGCGu--UGGCc -3'
miRNA:   3'- caGUCCGU--UCGuGCGCUGCuguACUG- -5'
12933 3' -54 NC_003387.1 + 22495 0.66 0.76715
Target:  5'- -cCGGGCGacggccucggcGGCGCGCu-CGACGUcGGCg -3'
miRNA:   3'- caGUCCGU-----------UCGUGCGcuGCUGUA-CUG- -5'
12933 3' -54 NC_003387.1 + 22984 0.72 0.393512
Target:  5'- uGUCGGGC-GGCGC-CGACGACGgcaaGGCc -3'
miRNA:   3'- -CAGUCCGuUCGUGcGCUGCUGUa---CUG- -5'
12933 3' -54 NC_003387.1 + 23371 0.74 0.28989
Target:  5'- gGUCAGGUcgccgaggaugAAGCGCGCGGCGGCuuucagcgcggccUGGCg -3'
miRNA:   3'- -CAGUCCG-----------UUCGUGCGCUGCUGu------------ACUG- -5'
12933 3' -54 NC_003387.1 + 25201 0.68 0.624518
Target:  5'- -aCAGGCAAccuCGCgGCGGCGGCcgGAUc -3'
miRNA:   3'- caGUCCGUUc--GUG-CGCUGCUGuaCUG- -5'
12933 3' -54 NC_003387.1 + 25268 0.66 0.75355
Target:  5'- gGUCGGGCAGGuCGCacaucgggcagucaGCcagGGCGACGUcGGCg -3'
miRNA:   3'- -CAGUCCGUUC-GUG--------------CG---CUGCUGUA-CUG- -5'
12933 3' -54 NC_003387.1 + 25684 0.7 0.482315
Target:  5'- cUCGGGCAGuaACGaCGAgaaggccaacgcCGACAUGACg -3'
miRNA:   3'- cAGUCCGUUcgUGC-GCU------------GCUGUACUG- -5'
12933 3' -54 NC_003387.1 + 26542 1.11 0.000867
Target:  5'- cGUCAGGCAAGCACGCGACGACAUGACg -3'
miRNA:   3'- -CAGUCCGUUCGUGCGCUGCUGUACUG- -5'
12933 3' -54 NC_003387.1 + 26584 0.75 0.278194
Target:  5'- gGUCAGGCc-GCGCgaGCGGCGACG-GACg -3'
miRNA:   3'- -CAGUCCGuuCGUG--CGCUGCUGUaCUG- -5'
12933 3' -54 NC_003387.1 + 26700 0.68 0.646999
Target:  5'- cGUC-GGCGGGUugGUGGCGAUGaacccGACa -3'
miRNA:   3'- -CAGuCCGUUCGugCGCUGCUGUa----CUG- -5'
12933 3' -54 NC_003387.1 + 27451 0.67 0.702755
Target:  5'- -aCGGGuCGAgcGCACGCG-CGACGUcGGCc -3'
miRNA:   3'- caGUCC-GUU--CGUGCGCuGCUGUA-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.