miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12933 3' -54 NC_003387.1 + 164 0.69 0.557554
Target:  5'- --uGGGCcuGCugGcCGACGGCAaGACg -3'
miRNA:   3'- cagUCCGuuCGugC-GCUGCUGUaCUG- -5'
12933 3' -54 NC_003387.1 + 732 0.67 0.685038
Target:  5'- gGUCGGGCAGGUGCGCcagGaugcggucggccaccGCGGCAgcGACg -3'
miRNA:   3'- -CAGUCCGUUCGUGCG---C---------------UGCUGUa-CUG- -5'
12933 3' -54 NC_003387.1 + 743 0.67 0.669423
Target:  5'- cGUC-GGU--GCGCGCGACG-UGUGGCg -3'
miRNA:   3'- -CAGuCCGuuCGUGCGCUGCuGUACUG- -5'
12933 3' -54 NC_003387.1 + 802 0.67 0.657102
Target:  5'- cUC-GGCAAGCugauuugcgcgaaGCGCGACGACGgccUGuACg -3'
miRNA:   3'- cAGuCCGUUCG-------------UGCGCUGCUGU---AC-UG- -5'
12933 3' -54 NC_003387.1 + 1307 0.66 0.746135
Target:  5'- -cCuGGCGGGCgACGuCGACGACGUcGGg -3'
miRNA:   3'- caGuCCGUUCG-UGC-GCUGCUGUA-CUg -5'
12933 3' -54 NC_003387.1 + 1611 0.66 0.756709
Target:  5'- uUCGGcCGGGCGCGUGugGGCAg--- -3'
miRNA:   3'- cAGUCcGUUCGUGCGCugCUGUacug -5'
12933 3' -54 NC_003387.1 + 1802 0.68 0.624518
Target:  5'- gGUCaAGGUgAAGCugaccgGCGCGGcCGAUAUGGCg -3'
miRNA:   3'- -CAG-UCCG-UUCG------UGCGCU-GCUGUACUG- -5'
12933 3' -54 NC_003387.1 + 2833 0.7 0.535637
Target:  5'- cGUCAacGGCc-GCgACGcCGACGACAUGAUc -3'
miRNA:   3'- -CAGU--CCGuuCG-UGC-GCUGCUGUACUG- -5'
12933 3' -54 NC_003387.1 + 3834 0.67 0.669423
Target:  5'- cGUCAGGgcGGCGCGguaGGCGGCGccGACg -3'
miRNA:   3'- -CAGUCCguUCGUGCg--CUGCUGUa-CUG- -5'
12933 3' -54 NC_003387.1 + 3946 0.69 0.567501
Target:  5'- aUCAgcGGCGAGCugGCuGCGccgagcaccgcguGCGUGACg -3'
miRNA:   3'- cAGU--CCGUUCGugCGcUGC-------------UGUACUG- -5'
12933 3' -54 NC_003387.1 + 4158 0.66 0.746135
Target:  5'- -gCGGGCGucgauGCACGCcuGGC-ACGUGACc -3'
miRNA:   3'- caGUCCGUu----CGUGCG--CUGcUGUACUG- -5'
12933 3' -54 NC_003387.1 + 4294 0.7 0.482315
Target:  5'- -gCGGGCGAGCAgcgcacCGCGAccCGGCAgUGGCu -3'
miRNA:   3'- caGUCCGUUCGU------GCGCU--GCUGU-ACUG- -5'
12933 3' -54 NC_003387.1 + 7056 0.72 0.421944
Target:  5'- cGUCAaGCGGGCGCuGCGGCGGgAucUGACg -3'
miRNA:   3'- -CAGUcCGUUCGUG-CGCUGCUgU--ACUG- -5'
12933 3' -54 NC_003387.1 + 9688 0.69 0.579719
Target:  5'- cGUCgAGGCGuggGGC-CGUGACGGCG-GGCu -3'
miRNA:   3'- -CAG-UCCGU---UCGuGCGCUGCUGUaCUG- -5'
12933 3' -54 NC_003387.1 + 10293 0.67 0.702755
Target:  5'- cUCGGGCGcucAGCGCGCaGGCcagGACGcgGGCa -3'
miRNA:   3'- cAGUCCGU---UCGUGCG-CUG---CUGUa-CUG- -5'
12933 3' -54 NC_003387.1 + 10444 0.67 0.6917
Target:  5'- -gCGGGCAucgacAGCGCGCugucggucgccGGUGGCAUGGCg -3'
miRNA:   3'- caGUCCGU-----UCGUGCG-----------CUGCUGUACUG- -5'
12933 3' -54 NC_003387.1 + 10928 0.7 0.512958
Target:  5'- -cCAGGCGugcgccaggucgcGGCACGCGccCGGCuUGACg -3'
miRNA:   3'- caGUCCGU-------------UCGUGCGCu-GCUGuACUG- -5'
12933 3' -54 NC_003387.1 + 11219 0.73 0.340511
Target:  5'- -gCAGGCGugGGCcgACgGCGACGGCAUGAa -3'
miRNA:   3'- caGUCCGU--UCG--UG-CGCUGCUGUACUg -5'
12933 3' -54 NC_003387.1 + 11611 0.66 0.755657
Target:  5'- gGUCGGGCAucacgaaGGC-CGCGACcGCcgcgcaGUGGCu -3'
miRNA:   3'- -CAGUCCGU-------UCGuGCGCUGcUG------UACUG- -5'
12933 3' -54 NC_003387.1 + 12451 0.71 0.431693
Target:  5'- --gAGGUucGCugGCGGCGGCcUGGCc -3'
miRNA:   3'- cagUCCGuuCGugCGCUGCUGuACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.