Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12933 | 3' | -54 | NC_003387.1 | + | 26542 | 1.11 | 0.000867 |
Target: 5'- cGUCAGGCAAGCACGCGACGACAUGACg -3' miRNA: 3'- -CAGUCCGUUCGUGCGCUGCUGUACUG- -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 25684 | 0.7 | 0.482315 |
Target: 5'- cUCGGGCAGuaACGaCGAgaaggccaacgcCGACAUGACg -3' miRNA: 3'- cAGUCCGUUcgUGC-GCU------------GCUGUACUG- -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 43200 | 0.7 | 0.534549 |
Target: 5'- -gCuGGcCGGGUACGCGGCGAUcggcgagGUGACg -3' miRNA: 3'- caGuCC-GUUCGUGCGCUGCUG-------UACUG- -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 38522 | 0.66 | 0.76715 |
Target: 5'- ---cGGCAAGUgaGCGcCGACGGCgucaugGUGGCg -3' miRNA: 3'- caguCCGUUCG--UGC-GCUGCUG------UACUG- -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 34273 | 0.73 | 0.332196 |
Target: 5'- aGUCGGGCGucacgguGCGCGCGuAC-ACGUGGCu -3' miRNA: 3'- -CAGUCCGUu------CGUGCGC-UGcUGUACUG- -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 11219 | 0.73 | 0.340511 |
Target: 5'- -gCAGGCGugGGCcgACgGCGACGGCAUGAa -3' miRNA: 3'- caGUCCGU--UCG--UG-CGCUGCUGUACUg -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 42777 | 0.72 | 0.412329 |
Target: 5'- aGUCGGGCAaguGGCugGUGugGAaa-GGCa -3' miRNA: 3'- -CAGUCCGU---UCGugCGCugCUguaCUG- -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 30750 | 0.72 | 0.421944 |
Target: 5'- cGUCGGGC-AGCAcCGUGuCGgGCGUGACc -3' miRNA: 3'- -CAGUCCGuUCGU-GCGCuGC-UGUACUG- -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 16041 | 0.71 | 0.431693 |
Target: 5'- aUC-GGCGucaCugGCGACGACAUGAUc -3' miRNA: 3'- cAGuCCGUuc-GugCGCUGCUGUACUG- -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 4294 | 0.7 | 0.482315 |
Target: 5'- -gCGGGCGAGCAgcgcacCGCGAccCGGCAgUGGCu -3' miRNA: 3'- caGUCCGUUCGU------GCGCU--GCUGU-ACUG- -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 38055 | 0.71 | 0.460689 |
Target: 5'- aUCGGGCGguggcugagcgAGCgccgcgucacuguGCGCGGCGGCcUGACg -3' miRNA: 3'- cAGUCCGU-----------UCG-------------UGCGCUGCUGuACUG- -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 12451 | 0.71 | 0.431693 |
Target: 5'- --gAGGUucGCugGCGGCGGCcUGGCc -3' miRNA: 3'- cagUCCGuuCGugCGCUGCUGuACUG- -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 29747 | 0.84 | 0.066299 |
Target: 5'- -gCGGGCGAGCuggACGcCGACGGCAUGACg -3' miRNA: 3'- caGUCCGUUCG---UGC-GCUGCUGUACUG- -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 50339 | 0.71 | 0.471954 |
Target: 5'- uUCAGGCc-GCcCGCGGCaACGUGACc -3' miRNA: 3'- cAGUCCGuuCGuGCGCUGcUGUACUG- -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 13457 | 0.79 | 0.14088 |
Target: 5'- uGUCGGGCAAGgGcCGCGACGGCGaggagGGCa -3' miRNA: 3'- -CAGUCCGUUCgU-GCGCUGCUGUa----CUG- -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 7056 | 0.72 | 0.421944 |
Target: 5'- cGUCAaGCGGGCGCuGCGGCGGgAucUGACg -3' miRNA: 3'- -CAGUcCGUUCGUG-CGCUGCUgU--ACUG- -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 35249 | 0.71 | 0.471954 |
Target: 5'- ----cGCAAGUACGcCGACGACAacUGGCg -3' miRNA: 3'- cagucCGUUCGUGC-GCUGCUGU--ACUG- -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 45289 | 0.7 | 0.514029 |
Target: 5'- cGUCGGGCGGGCAUcuGUGGCuuUcgGACg -3' miRNA: 3'- -CAGUCCGUUCGUG--CGCUGcuGuaCUG- -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 49073 | 0.74 | 0.300438 |
Target: 5'- -cCGGGCAGGCuCGCGGCGcGCA-GGCg -3' miRNA: 3'- caGUCCGUUCGuGCGCUGC-UGUaCUG- -5' |
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12933 | 3' | -54 | NC_003387.1 | + | 22984 | 0.72 | 0.393512 |
Target: 5'- uGUCGGGC-GGCGC-CGACGACGgcaaGGCc -3' miRNA: 3'- -CAGUCCGuUCGUGcGCUGCUGUa---CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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