miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12933 3' -54 NC_003387.1 + 26542 1.11 0.000867
Target:  5'- cGUCAGGCAAGCACGCGACGACAUGACg -3'
miRNA:   3'- -CAGUCCGUUCGUGCGCUGCUGUACUG- -5'
12933 3' -54 NC_003387.1 + 29747 0.84 0.066299
Target:  5'- -gCGGGCGAGCuggACGcCGACGGCAUGACg -3'
miRNA:   3'- caGUCCGUUCG---UGC-GCUGCUGUACUG- -5'
12933 3' -54 NC_003387.1 + 13457 0.79 0.14088
Target:  5'- uGUCGGGCAAGgGcCGCGACGGCGaggagGGCa -3'
miRNA:   3'- -CAGUCCGUUCgU-GCGCUGCUGUa----CUG- -5'
12933 3' -54 NC_003387.1 + 29560 0.78 0.181204
Target:  5'- gGUCAGGUcguAGGUAUGUGuCGGCGUGACg -3'
miRNA:   3'- -CAGUCCG---UUCGUGCGCuGCUGUACUG- -5'
12933 3' -54 NC_003387.1 + 26584 0.75 0.278194
Target:  5'- gGUCAGGCc-GCGCgaGCGGCGACG-GACg -3'
miRNA:   3'- -CAGUCCGuuCGUG--CGCUGCUGUaCUG- -5'
12933 3' -54 NC_003387.1 + 23371 0.74 0.28989
Target:  5'- gGUCAGGUcgccgaggaugAAGCGCGCGGCGGCuuucagcgcggccUGGCg -3'
miRNA:   3'- -CAGUCCG-----------UUCGUGCGCUGCUGu------------ACUG- -5'
12933 3' -54 NC_003387.1 + 49073 0.74 0.300438
Target:  5'- -cCGGGCAGGCuCGCGGCGcGCA-GGCg -3'
miRNA:   3'- caGUCCGUUCGuGCGCUGC-UGUaCUG- -5'
12933 3' -54 NC_003387.1 + 34273 0.73 0.332196
Target:  5'- aGUCGGGCGucacgguGCGCGCGuAC-ACGUGGCu -3'
miRNA:   3'- -CAGUCCGUu------CGUGCGC-UGcUGUACUG- -5'
12933 3' -54 NC_003387.1 + 11219 0.73 0.340511
Target:  5'- -gCAGGCGugGGCcgACgGCGACGGCAUGAa -3'
miRNA:   3'- caGUCCGU--UCG--UG-CGCUGCUGUACUg -5'
12933 3' -54 NC_003387.1 + 44633 0.73 0.348976
Target:  5'- cUCGGGCGGGUugGCGcCGACcgGcaGCg -3'
miRNA:   3'- cAGUCCGUUCGugCGCuGCUGuaC--UG- -5'
12933 3' -54 NC_003387.1 + 22984 0.72 0.393512
Target:  5'- uGUCGGGC-GGCGC-CGACGACGgcaaGGCc -3'
miRNA:   3'- -CAGUCCGuUCGUGcGCUGCUGUa---CUG- -5'
12933 3' -54 NC_003387.1 + 42777 0.72 0.412329
Target:  5'- aGUCGGGCAaguGGCugGUGugGAaa-GGCa -3'
miRNA:   3'- -CAGUCCGU---UCGugCGCugCUguaCUG- -5'
12933 3' -54 NC_003387.1 + 30750 0.72 0.421944
Target:  5'- cGUCGGGC-AGCAcCGUGuCGgGCGUGACc -3'
miRNA:   3'- -CAGUCCGuUCGU-GCGCuGC-UGUACUG- -5'
12933 3' -54 NC_003387.1 + 7056 0.72 0.421944
Target:  5'- cGUCAaGCGGGCGCuGCGGCGGgAucUGACg -3'
miRNA:   3'- -CAGUcCGUUCGUG-CGCUGCUgU--ACUG- -5'
12933 3' -54 NC_003387.1 + 16041 0.71 0.431693
Target:  5'- aUC-GGCGucaCugGCGACGACAUGAUc -3'
miRNA:   3'- cAGuCCGUuc-GugCGCUGCUGUACUG- -5'
12933 3' -54 NC_003387.1 + 12451 0.71 0.431693
Target:  5'- --gAGGUucGCugGCGGCGGCcUGGCc -3'
miRNA:   3'- cagUCCGuuCGugCGCUGCUGuACUG- -5'
12933 3' -54 NC_003387.1 + 43099 0.71 0.441572
Target:  5'- -aCGGGCGccgGGUacgaGCGCGACGGCGcGGCg -3'
miRNA:   3'- caGUCCGU---UCG----UGCGCUGCUGUaCUG- -5'
12933 3' -54 NC_003387.1 + 38055 0.71 0.460689
Target:  5'- aUCGGGCGguggcugagcgAGCgccgcgucacuguGCGCGGCGGCcUGACg -3'
miRNA:   3'- cAGUCCGU-----------UCG-------------UGCGCUGCUGuACUG- -5'
12933 3' -54 NC_003387.1 + 21528 0.71 0.471954
Target:  5'- uUCAGGCGcGCGuCGCGuuCGACGUGcCg -3'
miRNA:   3'- cAGUCCGUuCGU-GCGCu-GCUGUACuG- -5'
12933 3' -54 NC_003387.1 + 50339 0.71 0.471954
Target:  5'- uUCAGGCc-GCcCGCGGCaACGUGACc -3'
miRNA:   3'- cAGUCCGuuCGuGCGCUGcUGUACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.