miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12942 5' -56.3 NC_003387.1 + 29004 1.12 0.000422
Target:  5'- aGCAAUGCGCUGCGCCCGUCCGAAGUCa -3'
miRNA:   3'- -CGUUACGCGACGCGGGCAGGCUUCAG- -5'
12942 5' -56.3 NC_003387.1 + 45383 0.72 0.291396
Target:  5'- gGCGGUuaGCUGCGCCCGgCCGcccGAGcCg -3'
miRNA:   3'- -CGUUAcgCGACGCGGGCaGGC---UUCaG- -5'
12942 5' -56.3 NC_003387.1 + 11418 0.72 0.306295
Target:  5'- gGCGAUGagGUUGCGCUCGU-CGAGGUUu -3'
miRNA:   3'- -CGUUACg-CGACGCGGGCAgGCUUCAG- -5'
12942 5' -56.3 NC_003387.1 + 261 0.71 0.337823
Target:  5'- uGCAGUGCccugGCUGCGCCgCG-CCGGucgAGUg -3'
miRNA:   3'- -CGUUACG----CGACGCGG-GCaGGCU---UCAg -5'
12942 5' -56.3 NC_003387.1 + 24883 0.71 0.354451
Target:  5'- gGCGGUG-GCUGCGCCCuGUCCa----- -3'
miRNA:   3'- -CGUUACgCGACGCGGG-CAGGcuucag -5'
12942 5' -56.3 NC_003387.1 + 9671 0.71 0.362119
Target:  5'- gGCGGUGCggggucaGCU-CGCCCGUCUuGAGGUUg -3'
miRNA:   3'- -CGUUACG-------CGAcGCGGGCAGG-CUUCAG- -5'
12942 5' -56.3 NC_003387.1 + 27124 0.71 0.362978
Target:  5'- gGCAcUGCgggucgagGCcGUGCCCG-CCGggGUCg -3'
miRNA:   3'- -CGUuACG--------CGaCGCGGGCaGGCuuCAG- -5'
12942 5' -56.3 NC_003387.1 + 9537 0.71 0.362978
Target:  5'- aGCGGUGC-CUGCGCaagCCGccgCCGggGUg -3'
miRNA:   3'- -CGUUACGcGACGCG---GGCa--GGCuuCAg -5'
12942 5' -56.3 NC_003387.1 + 1766 0.7 0.380456
Target:  5'- gGCGGcgGCGCUgGCGCCCGagCUGAaagcccgcaaGGUCa -3'
miRNA:   3'- -CGUUa-CGCGA-CGCGGGCa-GGCU----------UCAG- -5'
12942 5' -56.3 NC_003387.1 + 7802 0.69 0.436146
Target:  5'- uGCAGgccgaGCUGCaacGCCUGgcggCCGAGGUCg -3'
miRNA:   3'- -CGUUacg--CGACG---CGGGCa---GGCUUCAG- -5'
12942 5' -56.3 NC_003387.1 + 1010 0.69 0.445877
Target:  5'- -gGAUGCGCUGCgGCCuugCGUuuGcGGGUCa -3'
miRNA:   3'- cgUUACGCGACG-CGG---GCAggC-UUCAG- -5'
12942 5' -56.3 NC_003387.1 + 48432 0.69 0.445877
Target:  5'- cGCGGUGCGCUGCucGCCCGcggccUCCa----- -3'
miRNA:   3'- -CGUUACGCGACG--CGGGC-----AGGcuucag -5'
12942 5' -56.3 NC_003387.1 + 13141 0.69 0.464694
Target:  5'- cGCuGGUGCGCaGCGCgaacaggCCGUC-GAGGUCa -3'
miRNA:   3'- -CG-UUACGCGaCGCG-------GGCAGgCUUCAG- -5'
12942 5' -56.3 NC_003387.1 + 49489 0.69 0.475775
Target:  5'- ----gGcCGgUGCGCCCGcCCGgcGUCg -3'
miRNA:   3'- cguuaC-GCgACGCGGGCaGGCuuCAG- -5'
12942 5' -56.3 NC_003387.1 + 1272 0.68 0.495218
Target:  5'- uGCGGUGCgGCUGCGCggCGUUCGAccggcgcAGUUc -3'
miRNA:   3'- -CGUUACG-CGACGCGg-GCAGGCU-------UCAG- -5'
12942 5' -56.3 NC_003387.1 + 32862 0.68 0.517116
Target:  5'- uGCAggGCGCccaGCGCCgCGUCggCGucGUCg -3'
miRNA:   3'- -CGUuaCGCGa--CGCGG-GCAG--GCuuCAG- -5'
12942 5' -56.3 NC_003387.1 + 25947 0.68 0.527679
Target:  5'- aGCGGUgcugGCGCUGCucgcuaaCCCGUucgCCGAGGUUc -3'
miRNA:   3'- -CGUUA----CGCGACGc------GGGCA---GGCUUCAG- -5'
12942 5' -56.3 NC_003387.1 + 23410 0.68 0.527679
Target:  5'- cGCGGccugGCGCUcGUGCCCGcggucgCCGggGa- -3'
miRNA:   3'- -CGUUa---CGCGA-CGCGGGCa-----GGCuuCag -5'
12942 5' -56.3 NC_003387.1 + 10931 0.68 0.534056
Target:  5'- gGC-GUGCGCcaggucgcggcacGCGCCCGgcuugacgUCGAGGUCg -3'
miRNA:   3'- -CGuUACGCGa------------CGCGGGCa-------GGCUUCAG- -5'
12942 5' -56.3 NC_003387.1 + 36086 0.68 0.535122
Target:  5'- uGCAuaAUGCGgUcaaucucgaacaggGCGCgCGUgCCGAGGUCg -3'
miRNA:   3'- -CGU--UACGCgA--------------CGCGgGCA-GGCUUCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.