Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12942 | 5' | -56.3 | NC_003387.1 | + | 261 | 0.71 | 0.337823 |
Target: 5'- uGCAGUGCccugGCUGCGCCgCG-CCGGucgAGUg -3' miRNA: 3'- -CGUUACG----CGACGCGG-GCaGGCU---UCAg -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 8944 | 0.66 | 0.625438 |
Target: 5'- cGCGAUGCaCgGCGCCCGcaUGAAGg- -3' miRNA: 3'- -CGUUACGcGaCGCGGGCagGCUUCag -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 1835 | 0.66 | 0.625438 |
Target: 5'- gGCGAaGgGCUGCgGCCUGUuuGAGaacggcGUCa -3' miRNA: 3'- -CGUUaCgCGACG-CGGGCAggCUU------CAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 3254 | 0.66 | 0.647456 |
Target: 5'- aGCAAc-UGCUGCGCCUGgccgCCGAAa-- -3' miRNA: 3'- -CGUUacGCGACGCGGGCa---GGCUUcag -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 7802 | 0.69 | 0.436146 |
Target: 5'- uGCAGgccgaGCUGCaacGCCUGgcggCCGAGGUCg -3' miRNA: 3'- -CGUUacg--CGACG---CGGGCa---GGCUUCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 49489 | 0.69 | 0.475775 |
Target: 5'- ----gGcCGgUGCGCCCGcCCGgcGUCg -3' miRNA: 3'- cguuaC-GCgACGCGGGCaGGCuuCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 48096 | 0.67 | 0.549038 |
Target: 5'- gGCGcUGcCGCUGCGCCCGcgguggcucgCCGA--UCa -3' miRNA: 3'- -CGUuAC-GCGACGCGGGCa---------GGCUucAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 5138 | 0.67 | 0.549038 |
Target: 5'- cGCGAcgagggGCGCUcgGCGCCgGUCgGugcAGUCa -3' miRNA: 3'- -CGUUa-----CGCGA--CGCGGgCAGgCu--UCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 29004 | 1.12 | 0.000422 |
Target: 5'- aGCAAUGCGCUGCGCCCGUCCGAAGUCa -3' miRNA: 3'- -CGUUACGCGACGCGGGCAGGCUUCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 46347 | 0.67 | 0.592479 |
Target: 5'- cGCAagGCGU--CGCCCGcggCCGAGGcCa -3' miRNA: 3'- -CGUuaCGCGacGCGGGCa--GGCUUCaG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 27199 | 0.67 | 0.570658 |
Target: 5'- cGCGA-GCGCaaccgGCGCaaGUCUGcGGUCg -3' miRNA: 3'- -CGUUaCGCGa----CGCGggCAGGCuUCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 24883 | 0.71 | 0.354451 |
Target: 5'- gGCGGUG-GCUGCGCCCuGUCCa----- -3' miRNA: 3'- -CGUUACgCGACGCGGG-CAGGcuucag -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 4432 | 0.66 | 0.614433 |
Target: 5'- gGCAagGCGUUcGCcgaGCCCGcgCCGAAGg- -3' miRNA: 3'- -CGUuaCGCGA-CG---CGGGCa-GGCUUCag -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 9537 | 0.71 | 0.362978 |
Target: 5'- aGCGGUGC-CUGCGCaagCCGccgCCGggGUg -3' miRNA: 3'- -CGUUACGcGACGCG---GGCa--GGCuuCAg -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 18525 | 0.67 | 0.559819 |
Target: 5'- cGCGAcgugGCGCUGUgGCuuGUgCGcGAGUCg -3' miRNA: 3'- -CGUUa---CGCGACG-CGggCAgGC-UUCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 21706 | 0.66 | 0.625438 |
Target: 5'- gGCGA-GCGCg--GCCCGcgCCGAccuGGUCg -3' miRNA: 3'- -CGUUaCGCGacgCGGGCa-GGCU---UCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 23895 | 0.66 | 0.625438 |
Target: 5'- cCGAcGUGCUGCGCgCCGaggggCUGAAcGUCg -3' miRNA: 3'- cGUUaCGCGACGCG-GGCa----GGCUU-CAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 1766 | 0.7 | 0.380456 |
Target: 5'- gGCGGcgGCGCUgGCGCCCGagCUGAaagcccgcaaGGUCa -3' miRNA: 3'- -CGUUa-CGCGA-CGCGGGCa-GGCU----------UCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 25947 | 0.68 | 0.527679 |
Target: 5'- aGCGGUgcugGCGCUGCucgcuaaCCCGUucgCCGAGGUUc -3' miRNA: 3'- -CGUUA----CGCGACGc------GGGCA---GGCUUCAG- -5' |
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12942 | 5' | -56.3 | NC_003387.1 | + | 45383 | 0.72 | 0.291396 |
Target: 5'- gGCGGUuaGCUGCGCCCGgCCGcccGAGcCg -3' miRNA: 3'- -CGUUAcgCGACGCGGGCaGGC---UUCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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