miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12944 3' -55.9 NC_003387.1 + 50946 0.66 0.676249
Target:  5'- aGCuGAUCUGaacgccaGCGCGAaGCGCCCCc- -3'
miRNA:   3'- -CG-UUAGACga-----UGUGCUcCGCGGGGac -5'
12944 3' -55.9 NC_003387.1 + 37824 0.66 0.676249
Target:  5'- cGCGAUCggGCcgaGCGAGGuCGggcaCCCCUGc -3'
miRNA:   3'- -CGUUAGa-CGaugUGCUCC-GC----GGGGAC- -5'
12944 3' -55.9 NC_003387.1 + 1403 0.66 0.665238
Target:  5'- cGCGcUCgaaGUUGUGCGAGGCGCCgCCg- -3'
miRNA:   3'- -CGUuAGa--CGAUGUGCUCCGCGG-GGac -5'
12944 3' -55.9 NC_003387.1 + 29739 0.66 0.664135
Target:  5'- uGCcGUCgucgGCgccgcccgACACGAugaccggGGCGCCCCa- -3'
miRNA:   3'- -CGuUAGa---CGa-------UGUGCU-------CCGCGGGGac -5'
12944 3' -55.9 NC_003387.1 + 18188 0.66 0.654196
Target:  5'- aCGAUCgGCU--GCGAGGUGCgCCUc -3'
miRNA:   3'- cGUUAGaCGAugUGCUCCGCGgGGAc -5'
12944 3' -55.9 NC_003387.1 + 15104 0.66 0.654196
Target:  5'- cGCgGAUCgGCgucaACGGGGCGCcugaCCCUGu -3'
miRNA:   3'- -CG-UUAGaCGaug-UGCUCCGCG----GGGAC- -5'
12944 3' -55.9 NC_003387.1 + 17 0.66 0.632061
Target:  5'- cGCGAUC-GUU-CGCGGGGCaCCCCc- -3'
miRNA:   3'- -CGUUAGaCGAuGUGCUCCGcGGGGac -5'
12944 3' -55.9 NC_003387.1 + 29782 0.66 0.620989
Target:  5'- cGCGGUCaGCuUGCGCGuguauccGGCGCCgCUa -3'
miRNA:   3'- -CGUUAGaCG-AUGUGCu------CCGCGGgGAc -5'
12944 3' -55.9 NC_003387.1 + 19871 0.66 0.620989
Target:  5'- cGCAGUCgGCgACGCGGaacCGCCCCg- -3'
miRNA:   3'- -CGUUAGaCGaUGUGCUcc-GCGGGGac -5'
12944 3' -55.9 NC_003387.1 + 30624 0.66 0.620989
Target:  5'- gGCAAcCUGCgcaagcacaaGCGCGAGaGCGCCUgaGa -3'
miRNA:   3'- -CGUUaGACGa---------UGUGCUC-CGCGGGgaC- -5'
12944 3' -55.9 NC_003387.1 + 2256 0.67 0.609926
Target:  5'- cCAAgggGCUGCGUG-GGCGCCCCg- -3'
miRNA:   3'- cGUUagaCGAUGUGCuCCGCGGGGac -5'
12944 3' -55.9 NC_003387.1 + 483 0.67 0.609926
Target:  5'- cGCGAgCUGCUcguCGCGAuGCGCgCCCg- -3'
miRNA:   3'- -CGUUaGACGAu--GUGCUcCGCG-GGGac -5'
12944 3' -55.9 NC_003387.1 + 358 0.67 0.586769
Target:  5'- cGCGGUCgauCUGCGCGAGcgguuccGCGCCCa-- -3'
miRNA:   3'- -CGUUAGac-GAUGUGCUC-------CGCGGGgac -5'
12944 3' -55.9 NC_003387.1 + 36183 0.67 0.576892
Target:  5'- cCGAUCUGCcaccugUACGCGcugcuguGGCGCCUCg- -3'
miRNA:   3'- cGUUAGACG------AUGUGCu------CCGCGGGGac -5'
12944 3' -55.9 NC_003387.1 + 50520 0.67 0.565961
Target:  5'- ------gGCgaGCACGAGGCaCCCCUGa -3'
miRNA:   3'- cguuagaCGa-UGUGCUCCGcGGGGAC- -5'
12944 3' -55.9 NC_003387.1 + 37593 0.67 0.565961
Target:  5'- gGCAAUCggGUcGCGCacagggucAGGCGCCCCg- -3'
miRNA:   3'- -CGUUAGa-CGaUGUGc-------UCCGCGGGGac -5'
12944 3' -55.9 NC_003387.1 + 7132 0.67 0.565961
Target:  5'- uCGAUCaGCcACGCGAGGCccgGCUCCUc -3'
miRNA:   3'- cGUUAGaCGaUGUGCUCCG---CGGGGAc -5'
12944 3' -55.9 NC_003387.1 + 14920 0.67 0.555084
Target:  5'- cGCGcgCUGCUGCgaccGCGGGugcuGCGCCCa-- -3'
miRNA:   3'- -CGUuaGACGAUG----UGCUC----CGCGGGgac -5'
12944 3' -55.9 NC_003387.1 + 44977 0.68 0.533525
Target:  5'- cGCGAUCgccGCUGCcgcCGAGGCGgUgCUGu -3'
miRNA:   3'- -CGUUAGa--CGAUGu--GCUCCGCgGgGAC- -5'
12944 3' -55.9 NC_003387.1 + 8235 0.68 0.522856
Target:  5'- cCGAUCUGCUGCAC---GCGCUgCUGu -3'
miRNA:   3'- cGUUAGACGAUGUGcucCGCGGgGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.