miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12956 3' -57.7 NC_003387.1 + 13168 0.72 0.249223
Target:  5'- cGAGGuCAGGCUCG-CGUGCCaUGAUCaGCc -3'
miRNA:   3'- -CUCU-GUCCGAGCgGCGUGG-ACUAG-CG- -5'
12956 3' -57.7 NC_003387.1 + 13503 0.66 0.533389
Target:  5'- -cGGCGGGUUCGCCgguggagucGCugacagcgucgGCCUGGgcUCGCu -3'
miRNA:   3'- cuCUGUCCGAGCGG---------CG-----------UGGACU--AGCG- -5'
12956 3' -57.7 NC_003387.1 + 13575 0.66 0.562099
Target:  5'- -cGACGGGCaggacgucggcuggUCGCCGCAgUCUGGcagcccCGCg -3'
miRNA:   3'- cuCUGUCCG--------------AGCGGCGU-GGACUa-----GCG- -5'
12956 3' -57.7 NC_003387.1 + 13896 0.66 0.554611
Target:  5'- cGGGCAGGUUCgacgucggGUgGCGCCcGAUCGg -3'
miRNA:   3'- cUCUGUCCGAG--------CGgCGUGGaCUAGCg -5'
12956 3' -57.7 NC_003387.1 + 14641 0.67 0.481737
Target:  5'- -cGuCAGGC-CGCCGCGCacagUGA-CGCg -3'
miRNA:   3'- cuCuGUCCGaGCGGCGUGg---ACUaGCG- -5'
12956 3' -57.7 NC_003387.1 + 17108 0.66 0.533389
Target:  5'- -cGGCGGGCUCcucgggGCCGUAggcGAUCGCu -3'
miRNA:   3'- cuCUGUCCGAG------CGGCGUggaCUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 19527 0.72 0.242912
Target:  5'- cGGGGCAa-CUCGCUGCugCcGAUCGCg -3'
miRNA:   3'- -CUCUGUccGAGCGGCGugGaCUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 19638 0.69 0.376878
Target:  5'- -cGGCGGGCgacgcgguuacgcUCGCgGCGCUUGG-CGCg -3'
miRNA:   3'- cuCUGUCCG-------------AGCGgCGUGGACUaGCG- -5'
12956 3' -57.7 NC_003387.1 + 20970 0.66 0.543966
Target:  5'- aGGGGCGGGCaaCGCCGCGaaUGc-CGCg -3'
miRNA:   3'- -CUCUGUCCGa-GCGGCGUggACuaGCG- -5'
12956 3' -57.7 NC_003387.1 + 21602 0.66 0.586879
Target:  5'- ---uCGGGCggCGCC-CACCUGG-CGCu -3'
miRNA:   3'- cucuGUCCGa-GCGGcGUGGACUaGCG- -5'
12956 3' -57.7 NC_003387.1 + 21708 0.69 0.369072
Target:  5'- cGAG-CGcGGCccgCGCCG-ACCUGGUCGUg -3'
miRNA:   3'- -CUCuGU-CCGa--GCGGCgUGGACUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 22350 0.67 0.491884
Target:  5'- cGGugGGGCUgGCCcaggcGCACCcGG-CGCa -3'
miRNA:   3'- cUCugUCCGAgCGG-----CGUGGaCUaGCG- -5'
12956 3' -57.7 NC_003387.1 + 22944 0.67 0.502127
Target:  5'- -cGGCAuGCggucaCGCCGUAgCUGAUCGUc -3'
miRNA:   3'- cuCUGUcCGa----GCGGCGUgGACUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 24165 0.66 0.565317
Target:  5'- -cGAC-GGCgaUCGCCGC-CUcGGUCGCc -3'
miRNA:   3'- cuCUGuCCG--AGCGGCGuGGaCUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 24528 0.66 0.576075
Target:  5'- cGAGcuGCAGG-UCGCCGC-CCUGAa--- -3'
miRNA:   3'- -CUC--UGUCCgAGCGGCGuGGACUagcg -5'
12956 3' -57.7 NC_003387.1 + 24704 0.67 0.471694
Target:  5'- aGGAUcGGCUUGCCGCGCUc-GUCGg -3'
miRNA:   3'- cUCUGuCCGAGCGGCGUGGacUAGCg -5'
12956 3' -57.7 NC_003387.1 + 24837 0.68 0.411042
Target:  5'- cGGGCGGcuggccgggcuccuGCUCGaCCGCGCCggugucGAUCGUg -3'
miRNA:   3'- cUCUGUC--------------CGAGC-GGCGUGGa-----CUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 27255 0.67 0.471694
Target:  5'- cGAGGC-GGCcCGgCaUGCCUGGUCGCg -3'
miRNA:   3'- -CUCUGuCCGaGCgGcGUGGACUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 29420 0.67 0.512463
Target:  5'- gGAGG-AGGC-CGCCGCAgcggcCCgcgcGGUCGCu -3'
miRNA:   3'- -CUCUgUCCGaGCGGCGU-----GGa---CUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 29860 0.71 0.282823
Target:  5'- cGAGuGCAGGCUgaucagugCGCCuugcGCGCC-GAUCGCg -3'
miRNA:   3'- -CUC-UGUCCGA--------GCGG----CGUGGaCUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.