miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12956 3' -57.7 NC_003387.1 + 206 0.66 0.586879
Target:  5'- -cGGC-GGCUUGUCGCuCUUG-UCGCg -3'
miRNA:   3'- cuCUGuCCGAGCGGCGuGGACuAGCG- -5'
12956 3' -57.7 NC_003387.1 + 266 0.66 0.565317
Target:  5'- --uGCccuGGCUgCGCCGCGCC-GGUCGa -3'
miRNA:   3'- cucUGu--CCGA-GCGGCGUGGaCUAGCg -5'
12956 3' -57.7 NC_003387.1 + 346 0.71 0.312212
Target:  5'- -cGAUuGGCUCGCCGCAaacgugacagUCUGGcucgUCGCg -3'
miRNA:   3'- cuCUGuCCGAGCGGCGU----------GGACU----AGCG- -5'
12956 3' -57.7 NC_003387.1 + 2173 0.67 0.512463
Target:  5'- cGAG-CA-GCUCGgCGC-CUUGGUCGCc -3'
miRNA:   3'- -CUCuGUcCGAGCgGCGuGGACUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 3545 0.68 0.442222
Target:  5'- -cGAC-GGC-CGCCGCcugcgcgaccGCCUGcgCGCu -3'
miRNA:   3'- cuCUGuCCGaGCGGCG----------UGGACuaGCG- -5'
12956 3' -57.7 NC_003387.1 + 4154 0.67 0.502127
Target:  5'- cGAGGCGGGCgucgaugcaCGCCugGCACgUGAccucggCGCg -3'
miRNA:   3'- -CUCUGUCCGa--------GCGG--CGUGgACUa-----GCG- -5'
12956 3' -57.7 NC_003387.1 + 5851 0.69 0.377753
Target:  5'- --cGCAGGUgggggCGCCGCAaccguCCUGGUgCGCu -3'
miRNA:   3'- cucUGUCCGa----GCGGCGU-----GGACUA-GCG- -5'
12956 3' -57.7 NC_003387.1 + 6058 0.7 0.352124
Target:  5'- cGGGCAGGUUCGagCGCACCaUGAcgacCGCc -3'
miRNA:   3'- cUCUGUCCGAGCg-GCGUGG-ACUa---GCG- -5'
12956 3' -57.7 NC_003387.1 + 6100 0.67 0.512463
Target:  5'- -cGGCAGGCUCGaa-CACCUGcgacaugCGCg -3'
miRNA:   3'- cuCUGUCCGAGCggcGUGGACua-----GCG- -5'
12956 3' -57.7 NC_003387.1 + 7145 0.69 0.396424
Target:  5'- cGAGGCccGGCUCcucgGCCGUGCCgacgagcuggcggcgGAUCGCc -3'
miRNA:   3'- -CUCUGu-CCGAG----CGGCGUGGa--------------CUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 7975 0.66 0.565317
Target:  5'- -cGGCGGGCgggUGCUGCGCUUcGG-CGCc -3'
miRNA:   3'- cuCUGUCCGa--GCGGCGUGGA-CUaGCG- -5'
12956 3' -57.7 NC_003387.1 + 8769 0.66 0.553544
Target:  5'- --uGCGGGCcuUCGCCGUgcggcggcgggcgACCUGAUuccCGCu -3'
miRNA:   3'- cucUGUCCG--AGCGGCG-------------UGGACUA---GCG- -5'
12956 3' -57.7 NC_003387.1 + 8934 0.69 0.377753
Target:  5'- cGAGgaaGCGGGCgaCGCCGguCCUGGugUCGUc -3'
miRNA:   3'- -CUC---UGUCCGa-GCGGCguGGACU--AGCG- -5'
12956 3' -57.7 NC_003387.1 + 9395 0.68 0.451932
Target:  5'- cGAG-CAGGaaaUUGCCcgGCGCUgUGAUCGCg -3'
miRNA:   3'- -CUCuGUCCg--AGCGG--CGUGG-ACUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 10253 0.68 0.442222
Target:  5'- -cGGCGGGaUCGCC-CGgUUGGUCGCg -3'
miRNA:   3'- cuCUGUCCgAGCGGcGUgGACUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 10408 0.68 0.413821
Target:  5'- -uGAUcuGCUCGUCGCGCCacgccuUGAUCGUc -3'
miRNA:   3'- cuCUGucCGAGCGGCGUGG------ACUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 10442 0.67 0.491884
Target:  5'- -cGGCGGGCaUCGacagCGCGCUgucGGUCGCc -3'
miRNA:   3'- cuCUGUCCG-AGCg---GCGUGGa--CUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 12199 0.66 0.542905
Target:  5'- cGGGCAGG-UCGCUGCucggugccgggccACCggcGGUCGCc -3'
miRNA:   3'- cUCUGUCCgAGCGGCG-------------UGGa--CUAGCG- -5'
12956 3' -57.7 NC_003387.1 + 12303 0.66 0.586879
Target:  5'- cGGGCcGGUUCGCCGuCGCC-GA-CGUa -3'
miRNA:   3'- cUCUGuCCGAGCGGC-GUGGaCUaGCG- -5'
12956 3' -57.7 NC_003387.1 + 12422 0.68 0.442222
Target:  5'- cAGGCGGcGCUUGCCGUcgucguccucgAUCgaggGGUCGCg -3'
miRNA:   3'- cUCUGUC-CGAGCGGCG-----------UGGa---CUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.