Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12956 | 3' | -57.7 | NC_003387.1 | + | 35356 | 1.1 | 0.00041 |
Target: 5'- cGAGACAGGCUCGCCGCACCUGAUCGCc -3' miRNA: 3'- -CUCUGUCCGAGCGGCGUGGACUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 34136 | 0.67 | 0.522886 |
Target: 5'- cGAGGCGGGCgacccugaCGCCugggucgacccGCACCUGuggGCa -3' miRNA: 3'- -CUCUGUCCGa-------GCGG-----------CGUGGACuagCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 45433 | 0.66 | 0.533389 |
Target: 5'- aGGACAugcgcaaGCUCGCCGgGCCUG--CGCc -3' miRNA: 3'- cUCUGUc------CGAGCGGCgUGGACuaGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 48781 | 0.66 | 0.586879 |
Target: 5'- --cGCAGccaGCUCGCCGC---UGAUCGCc -3' miRNA: 3'- cucUGUC---CGAGCGGCGuggACUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 19527 | 0.72 | 0.242912 |
Target: 5'- cGGGGCAa-CUCGCUGCugCcGAUCGCg -3' miRNA: 3'- -CUCUGUccGAGCGGCGugGaCUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 49074 | 0.72 | 0.26897 |
Target: 5'- cGGGCAGGCUCGCgGCGCgCaGG-CGUa -3' miRNA: 3'- cUCUGUCCGAGCGgCGUG-GaCUaGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 43374 | 0.71 | 0.297236 |
Target: 5'- gGAGAUA-GCUCGCCuGCACggcgcccggCUGGUCGUg -3' miRNA: 3'- -CUCUGUcCGAGCGG-CGUG---------GACUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 32327 | 0.7 | 0.335736 |
Target: 5'- -cGACAuGGaC-CGCUGCGgCUGAUCGCc -3' miRNA: 3'- cuCUGU-CC-GaGCGGCGUgGACUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 27255 | 0.67 | 0.471694 |
Target: 5'- cGAGGC-GGCcCGgCaUGCCUGGUCGCg -3' miRNA: 3'- -CUCUGuCCGaGCgGcGUGGACUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 29420 | 0.67 | 0.512463 |
Target: 5'- gGAGG-AGGC-CGCCGCAgcggcCCgcgcGGUCGCu -3' miRNA: 3'- -CUCUgUCCGaGCGGCGU-----GGa---CUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 10442 | 0.67 | 0.491884 |
Target: 5'- -cGGCGGGCaUCGacagCGCGCUgucGGUCGCc -3' miRNA: 3'- cuCUGUCCG-AGCg---GCGUGGa--CUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 44941 | 0.68 | 0.451932 |
Target: 5'- cGAGGCgcucgcgaAGGCUCagGCCGCGgCUcaggccgcGAUCGCc -3' miRNA: 3'- -CUCUG--------UCCGAG--CGGCGUgGA--------CUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 44396 | 0.76 | 0.13129 |
Target: 5'- cGAGGCGaaGCUCGCCGCGgCUGA-CGCu -3' miRNA: 3'- -CUCUGUc-CGAGCGGCGUgGACUaGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 37775 | 0.67 | 0.502127 |
Target: 5'- aGGGCGuGCUCaagCGCGCCUGggCGCa -3' miRNA: 3'- cUCUGUcCGAGcg-GCGUGGACuaGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 36657 | 0.73 | 0.207254 |
Target: 5'- cGAGugGcaucaccGGCUCGCCG-ACCUGGcCGCg -3' miRNA: 3'- -CUCugU-------CCGAGCGGCgUGGACUaGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 21708 | 0.69 | 0.369072 |
Target: 5'- cGAG-CGcGGCccgCGCCG-ACCUGGUCGUg -3' miRNA: 3'- -CUCuGU-CCGa--GCGGCgUGGACUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 2173 | 0.67 | 0.512463 |
Target: 5'- cGAG-CA-GCUCGgCGC-CUUGGUCGCc -3' miRNA: 3'- -CUCuGUcCGAGCgGCGuGGACUAGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 13503 | 0.66 | 0.533389 |
Target: 5'- -cGGCGGGUUCGCCgguggagucGCugacagcgucgGCCUGGgcUCGCu -3' miRNA: 3'- cuCUGUCCGAGCGG---------CG-----------UGGACU--AGCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 52253 | 0.73 | 0.2078 |
Target: 5'- cGAGACugacGGCaaCGCCGCGCCcGAgcgCGCg -3' miRNA: 3'- -CUCUGu---CCGa-GCGGCGUGGaCUa--GCG- -5' |
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12956 | 3' | -57.7 | NC_003387.1 | + | 41784 | 0.71 | 0.275827 |
Target: 5'- aAGcCGGGCgcgUGCCGCgACCUGG-CGCa -3' miRNA: 3'- cUCuGUCCGa--GCGGCG-UGGACUaGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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