miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12957 3' -57.7 NC_003387.1 + 47394 0.69 0.366315
Target:  5'- cGCaAGCGCGGgGCAaccgGCcccGCCCCGAg -3'
miRNA:   3'- aCGcUUGUGUCgCGUa---CGu--CGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 28878 0.69 0.349316
Target:  5'- cGCGAgcgGCACGGCGCcg--AGUCCCGGc -3'
miRNA:   3'- aCGCU---UGUGUCGCGuacgUCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 48040 0.72 0.236303
Target:  5'- gUGCGGGCACGGCaaGCAguucacccgcuaccGC-GCCCCGAa -3'
miRNA:   3'- -ACGCUUGUGUCG--CGUa-------------CGuCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 22643 0.75 0.152211
Target:  5'- cGcCGAcgACugAGCGCAUGCucgcuGGCCCUGAu -3'
miRNA:   3'- aC-GCU--UGugUCGCGUACG-----UCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 18983 0.68 0.420629
Target:  5'- gGCGAGCAUcgacgagcuGGCgGCGUG-GGCCUCGAc -3'
miRNA:   3'- aCGCUUGUG---------UCG-CGUACgUCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 42748 0.68 0.401985
Target:  5'- gUGCucGGAUcgGCuGCGC-UGguGCCCCGAg -3'
miRNA:   3'- -ACG--CUUG--UGuCGCGuACguCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 31540 0.7 0.341029
Target:  5'- -aUGGugACAGC-CAUGaCAGCCCCGc -3'
miRNA:   3'- acGCUugUGUCGcGUAC-GUCGGGGCu -5'
12957 3' -57.7 NC_003387.1 + 36508 0.77 0.11526
Target:  5'- cGCGgcauAugGCAGCGCAgGCugAGCCCCGAc -3'
miRNA:   3'- aCGC----UugUGUCGCGUaCG--UCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 21225 0.68 0.396496
Target:  5'- gUGCGGGCGCAGgGCGauccggucggcauggUGC-GCCgCGAc -3'
miRNA:   3'- -ACGCUUGUGUCgCGU---------------ACGuCGGgGCU- -5'
12957 3' -57.7 NC_003387.1 + 39687 0.79 0.075234
Target:  5'- cGCGAaggcgACGCAGCGCGUGCAGCagCGGc -3'
miRNA:   3'- aCGCU-----UGUGUCGCGUACGUCGggGCU- -5'
12957 3' -57.7 NC_003387.1 + 12008 0.7 0.341029
Target:  5'- cGCGGccuggucgACACGGCGCAUGCGGUgUgGc -3'
miRNA:   3'- aCGCU--------UGUGUCGCGUACGUCGgGgCu -5'
12957 3' -57.7 NC_003387.1 + 10242 0.69 0.366315
Target:  5'- cGCGAugagccGCGCcgAGCGCggGCucaaggucGCCCCGAa -3'
miRNA:   3'- aCGCU------UGUG--UCGCGuaCGu-------CGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 39879 0.7 0.323304
Target:  5'- gGCGcauaGACAUAGCaGCGUGCcucaccacaacuGCCCCGGg -3'
miRNA:   3'- aCGC----UUGUGUCG-CGUACGu-----------CGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 49679 0.72 0.246322
Target:  5'- gGuCGAGCAguGCugaGCGUGCAGCCCgGc -3'
miRNA:   3'- aC-GCUUGUguCG---CGUACGUCGGGgCu -5'
12957 3' -57.7 NC_003387.1 + 48972 0.73 0.204992
Target:  5'- gGCGAucguGCACGcGgGCAUGCGGCCgUCGAu -3'
miRNA:   3'- aCGCU----UGUGU-CgCGUACGUCGG-GGCU- -5'
12957 3' -57.7 NC_003387.1 + 27199 0.74 0.189195
Target:  5'- cGCGAGCGCaaccGGCGCAagucUGCGGUcgaCCCGGc -3'
miRNA:   3'- aCGCUUGUG----UCGCGU----ACGUCG---GGGCU- -5'
12957 3' -57.7 NC_003387.1 + 8114 0.67 0.469425
Target:  5'- gGCGAGCcCAGCucguacGCGcUGCuGUCCCGGc -3'
miRNA:   3'- aCGCUUGuGUCG------CGU-ACGuCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 34196 0.68 0.439785
Target:  5'- cGCGAACGCcuGCGUgccaccGCGGCggCCCGAg -3'
miRNA:   3'- aCGCUUGUGu-CGCGua----CGUCG--GGGCU- -5'
12957 3' -57.7 NC_003387.1 + 29313 0.68 0.411242
Target:  5'- cGCGGGCACgAGCGCcagGCcGCgCUGAa -3'
miRNA:   3'- aCGCUUGUG-UCGCGua-CGuCGgGGCU- -5'
12957 3' -57.7 NC_003387.1 + 32537 0.68 0.401985
Target:  5'- gUGCGAggcGCAgCAGCGCAUcaaccGC-GCCCuCGAc -3'
miRNA:   3'- -ACGCU---UGU-GUCGCGUA-----CGuCGGG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.