miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12957 3' -57.7 NC_003387.1 + 35775 1.09 0.000471
Target:  5'- uUGCGAACACAGCGCAUGCAGCCCCGAg -3'
miRNA:   3'- -ACGCUUGUGUCGCGUACGUCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 31540 0.7 0.341029
Target:  5'- -aUGGugACAGC-CAUGaCAGCCCCGc -3'
miRNA:   3'- acGCUugUGUCGcGUAC-GUCGGGGCu -5'
12957 3' -57.7 NC_003387.1 + 28878 0.69 0.349316
Target:  5'- cGCGAgcgGCACGGCGCcg--AGUCCCGGc -3'
miRNA:   3'- aCGCU---UGUGUCGCGuacgUCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 27239 0.66 0.563698
Target:  5'- aGCuGACAC-GCGCGgucgagGCGGCCCgGc -3'
miRNA:   3'- aCGcUUGUGuCGCGUa-----CGUCGGGgCu -5'
12957 3' -57.7 NC_003387.1 + 27199 0.74 0.189195
Target:  5'- cGCGAGCGCaaccGGCGCAagucUGCGGUcgaCCCGGc -3'
miRNA:   3'- aCGCUUGUG----UCGCGU----ACGUCG---GGGCU- -5'
12957 3' -57.7 NC_003387.1 + 14208 0.73 0.194338
Target:  5'- cGCGAGCuugAgGGCGuCAUGCAGCCCg-- -3'
miRNA:   3'- aCGCUUG---UgUCGC-GUACGUCGGGgcu -5'
12957 3' -57.7 NC_003387.1 + 48972 0.73 0.204992
Target:  5'- gGCGAucguGCACGcGgGCAUGCGGCCgUCGAu -3'
miRNA:   3'- aCGCU----UGUGU-CgCGUACGUCGG-GGCU- -5'
12957 3' -57.7 NC_003387.1 + 48844 0.73 0.216147
Target:  5'- cGCGAcGCACGGCGU--GCAcGCCCUGGu -3'
miRNA:   3'- aCGCU-UGUGUCGCGuaCGU-CGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 49679 0.72 0.246322
Target:  5'- gGuCGAGCAguGCugaGCGUGCAGCCCgGc -3'
miRNA:   3'- aC-GCUUGUguCG---CGUACGUCGGGgCu -5'
12957 3' -57.7 NC_003387.1 + 32728 0.7 0.332886
Target:  5'- gGC--GCACGGCGCG-GUGGCCUCGGc -3'
miRNA:   3'- aCGcuUGUGUCGCGUaCGUCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 42902 0.7 0.317031
Target:  5'- gGCcAGCACaaaAGCGCAgccUGCAGCgCCGGu -3'
miRNA:   3'- aCGcUUGUG---UCGCGU---ACGUCGgGGCU- -5'
12957 3' -57.7 NC_003387.1 + 48040 0.72 0.236303
Target:  5'- gUGCGGGCACGGCaaGCAguucacccgcuaccGC-GCCCCGAa -3'
miRNA:   3'- -ACGCUUGUGUCG--CGUa-------------CGuCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 39687 0.79 0.075234
Target:  5'- cGCGAaggcgACGCAGCGCGUGCAGCagCGGc -3'
miRNA:   3'- aCGCU-----UGUGUCGCGUACGUCGggGCU- -5'
12957 3' -57.7 NC_003387.1 + 39879 0.7 0.323304
Target:  5'- gGCGcauaGACAUAGCaGCGUGCcucaccacaacuGCCCCGGg -3'
miRNA:   3'- aCGC----UUGUGUCG-CGUACGu-----------CGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 36508 0.77 0.11526
Target:  5'- cGCGgcauAugGCAGCGCAgGCugAGCCCCGAc -3'
miRNA:   3'- aCGC----UugUGUCGCGUaCG--UCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 25158 0.73 0.216147
Target:  5'- aUGCGAcgcagguucgGCuCGGCGCG-GUGGCCCCGGc -3'
miRNA:   3'- -ACGCU----------UGuGUCGCGUaCGUCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 627 0.7 0.324886
Target:  5'- gGCGAGgGCAGCGUcgccgccgcgGCAGCgacgCCCGAu -3'
miRNA:   3'- aCGCUUgUGUCGCGua--------CGUCG----GGGCU- -5'
12957 3' -57.7 NC_003387.1 + 12008 0.7 0.341029
Target:  5'- cGCGGccuggucgACACGGCGCAUGCGGUgUgGc -3'
miRNA:   3'- aCGCU--------UGUGUCGCGUACGUCGgGgCu -5'
12957 3' -57.7 NC_003387.1 + 22643 0.75 0.152211
Target:  5'- cGcCGAcgACugAGCGCAUGCucgcuGGCCCUGAu -3'
miRNA:   3'- aC-GCU--UGugUCGCGUACG-----UCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 49593 0.73 0.194338
Target:  5'- gGCGGugGCcugGCAGUGCugccgcugGCGGCCCCGAu -3'
miRNA:   3'- aCGCU--UG---UGUCGCGua------CGUCGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.