miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12957 3' -57.7 NC_003387.1 + 35775 1.09 0.000471
Target:  5'- uUGCGAACACAGCGCAUGCAGCCCCGAg -3'
miRNA:   3'- -ACGCUUGUGUCGCGUACGUCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 38937 0.83 0.043357
Target:  5'- cUGCGAGCGCAGCGCGaccggGUccauaccgaccGGCCCCGAa -3'
miRNA:   3'- -ACGCUUGUGUCGCGUa----CG-----------UCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 39687 0.79 0.075234
Target:  5'- cGCGAaggcgACGCAGCGCGUGCAGCagCGGc -3'
miRNA:   3'- aCGCU-----UGUGUCGCGUACGUCGggGCU- -5'
12957 3' -57.7 NC_003387.1 + 36508 0.77 0.11526
Target:  5'- cGCGgcauAugGCAGCGCAgGCugAGCCCCGAc -3'
miRNA:   3'- aCGC----UugUGUCGCGUaCG--UCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 8314 0.75 0.148079
Target:  5'- cGCGAGCACAGCGU---CAGCCgCGGc -3'
miRNA:   3'- aCGCUUGUGUCGCGuacGUCGGgGCU- -5'
12957 3' -57.7 NC_003387.1 + 22643 0.75 0.152211
Target:  5'- cGcCGAcgACugAGCGCAUGCucgcuGGCCCUGAu -3'
miRNA:   3'- aC-GCU--UGugUCGCGUACG-----UCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 27199 0.74 0.189195
Target:  5'- cGCGAGCGCaaccGGCGCAagucUGCGGUcgaCCCGGc -3'
miRNA:   3'- aCGCUUGUG----UCGCGU----ACGUCG---GGGCU- -5'
12957 3' -57.7 NC_003387.1 + 49593 0.73 0.194338
Target:  5'- gGCGGugGCcugGCAGUGCugccgcugGCGGCCCCGAu -3'
miRNA:   3'- aCGCU--UG---UGUCGCGua------CGUCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 14208 0.73 0.194338
Target:  5'- cGCGAGCuugAgGGCGuCAUGCAGCCCg-- -3'
miRNA:   3'- aCGCUUG---UgUCGC-GUACGUCGGGgcu -5'
12957 3' -57.7 NC_003387.1 + 6382 0.73 0.194338
Target:  5'- cGCGGGCGacgccuuGCGUggGCGGCCCCGc -3'
miRNA:   3'- aCGCUUGUgu-----CGCGuaCGUCGGGGCu -5'
12957 3' -57.7 NC_003387.1 + 48972 0.73 0.204992
Target:  5'- gGCGAucguGCACGcGgGCAUGCGGCCgUCGAu -3'
miRNA:   3'- aCGCU----UGUGU-CgCGUACGUCGG-GGCU- -5'
12957 3' -57.7 NC_003387.1 + 43783 0.73 0.210506
Target:  5'- aUGCGGGCGCcGUGCAUcgcgGUGGCCUCGGa -3'
miRNA:   3'- -ACGCUUGUGuCGCGUA----CGUCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 25158 0.73 0.216147
Target:  5'- aUGCGAcgcagguucgGCuCGGCGCG-GUGGCCCCGGc -3'
miRNA:   3'- -ACGCU----------UGuGUCGCGUaCGUCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 48844 0.73 0.216147
Target:  5'- cGCGAcGCACGGCGU--GCAcGCCCUGGu -3'
miRNA:   3'- aCGCU-UGUGUCGCGuaCGU-CGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 48040 0.72 0.236303
Target:  5'- gUGCGGGCACGGCaaGCAguucacccgcuaccGC-GCCCCGAa -3'
miRNA:   3'- -ACGCUUGUGUCG--CGUa-------------CGuCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 49679 0.72 0.246322
Target:  5'- gGuCGAGCAguGCugaGCGUGCAGCCCgGc -3'
miRNA:   3'- aC-GCUUGUguCG---CGUACGUCGGGgCu -5'
12957 3' -57.7 NC_003387.1 + 7980 0.72 0.252761
Target:  5'- gGCGggUGCuGCGCuucgGC-GCCCCGGc -3'
miRNA:   3'- aCGCuuGUGuCGCGua--CGuCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 23722 0.72 0.252761
Target:  5'- gGaCGGGCGCAGCGCAuugcUGCAGCUUagCGGg -3'
miRNA:   3'- aC-GCUUGUGUCGCGU----ACGUCGGG--GCU- -5'
12957 3' -57.7 NC_003387.1 + 48597 0.72 0.252761
Target:  5'- gUGUGAACGCAGCGCGgUGuCGGCCg--- -3'
miRNA:   3'- -ACGCUUGUGUCGCGU-AC-GUCGGggcu -5'
12957 3' -57.7 NC_003387.1 + 44469 0.71 0.258674
Target:  5'- uUGCGGugguuggccccgcACAgCAGCGCGUGCAGCagaUCGGc -3'
miRNA:   3'- -ACGCU-------------UGU-GUCGCGUACGUCGg--GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.