Results 1 - 20 of 122 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12957 | 3' | -57.7 | NC_003387.1 | + | 1188 | 0.66 | 0.563698 |
Target: 5'- gGCGGGCGCAgGgGCAaggGUGGCCgUCGAc -3' miRNA: 3'- aCGCUUGUGU-CgCGUa--CGUCGG-GGCU- -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 21847 | 0.66 | 0.531531 |
Target: 5'- gUGUGGACAcCGGCGCAccaGGUgCCGAc -3' miRNA: 3'- -ACGCUUGU-GUCGCGUacgUCGgGGCU- -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 5914 | 0.66 | 0.531531 |
Target: 5'- aGCGAgcuaACGCAGCGCG---GGCCgUCGAa -3' miRNA: 3'- aCGCU----UGUGUCGCGUacgUCGG-GGCU- -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 10254 | 0.66 | 0.528349 |
Target: 5'- gGCGGGaucgcccgguugguCGCGGCGCAcuCGGCCuuGAa -3' miRNA: 3'- aCGCUU--------------GUGUCGCGUacGUCGGggCU- -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 8190 | 0.66 | 0.520952 |
Target: 5'- -uCGAGCccuGCGGCGCcggGCGGCCCgGc -3' miRNA: 3'- acGCUUG---UGUCGCGua-CGUCGGGgCu -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 966 | 0.66 | 0.520952 |
Target: 5'- gGCGggUAguuGUGUAUGCcGCCgCCGAg -3' miRNA: 3'- aCGCuuGUgu-CGCGUACGuCGG-GGCU- -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 20583 | 0.66 | 0.519899 |
Target: 5'- gGCGGcgGCACuccucgauguGGCGCAUGaguugcauugcguCAGCCCCu- -3' miRNA: 3'- aCGCU--UGUG----------UCGCGUAC-------------GUCGGGGcu -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 18742 | 0.66 | 0.510457 |
Target: 5'- aGCGG--GCAGCGCAUGCAcaugcGCUuuGc -3' miRNA: 3'- aCGCUugUGUCGCGUACGU-----CGGggCu -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 13580 | 0.66 | 0.510457 |
Target: 5'- gGCaGGACGuCGGCuggucgccGCAgucugGCAGCCCCGc -3' miRNA: 3'- aCG-CUUGU-GUCG--------CGUa----CGUCGGGGCu -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 14072 | 0.66 | 0.535784 |
Target: 5'- gUGCGGAUugaugcgccggaacuGCAGCGCcagcGCGGCCUgCGGg -3' miRNA: 3'- -ACGCUUG---------------UGUCGCGua--CGUCGGG-GCU- -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 8869 | 0.66 | 0.542186 |
Target: 5'- cGCG-AUAUAGCaCugGUGCAccGCCCCGAc -3' miRNA: 3'- aCGCuUGUGUCGcG--UACGU--CGGGGCU- -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 14875 | 0.66 | 0.542186 |
Target: 5'- gGCGAGcCGCcgGGCGCAggGguGCCCg-- -3' miRNA: 3'- aCGCUU-GUG--UCGCGUa-CguCGGGgcu -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 42352 | 0.66 | 0.563698 |
Target: 5'- uUGCGGGC-CAGCu--UGCGGCCCa-- -3' miRNA: 3'- -ACGCUUGuGUCGcguACGUCGGGgcu -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 46819 | 0.66 | 0.552911 |
Target: 5'- cGCGuaaGCGGCGCaAUGCuucuGCCgCGGc -3' miRNA: 3'- aCGCuugUGUCGCG-UACGu---CGGgGCU- -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 32720 | 0.66 | 0.552911 |
Target: 5'- cGUGAGgucgaACGGCGCcgcggagaaCGGCCCCGAg -3' miRNA: 3'- aCGCUUg----UGUCGCGuac------GUCGGGGCU- -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 31058 | 0.66 | 0.552911 |
Target: 5'- gGCGAACAC-GUGCucgGCcGCCgCCGc -3' miRNA: 3'- aCGCUUGUGuCGCGua-CGuCGG-GGCu -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 1922 | 0.66 | 0.552911 |
Target: 5'- cGCGGugAggucgaucgugCAGCGCAUGaucCGGCCgCGGg -3' miRNA: 3'- aCGCUugU-----------GUCGCGUAC---GUCGGgGCU- -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 1614 | 0.66 | 0.552911 |
Target: 5'- gGcCGGGCGC-GUGUggGCAGCCUCGc -3' miRNA: 3'- aC-GCUUGUGuCGCGuaCGUCGGGGCu -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 6665 | 0.66 | 0.542186 |
Target: 5'- cGCucaAGCGCGGUGCGcUGCAGauCCUCGAc -3' miRNA: 3'- aCGc--UUGUGUCGCGU-ACGUC--GGGGCU- -5' |
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12957 | 3' | -57.7 | NC_003387.1 | + | 27892 | 0.66 | 0.542186 |
Target: 5'- gGcCGcAgACAGCGCAcacGCGGCCuuGAc -3' miRNA: 3'- aC-GCuUgUGUCGCGUa--CGUCGGggCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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