miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12957 3' -57.7 NC_003387.1 + 627 0.7 0.324886
Target:  5'- gGCGAGgGCAGCGUcgccgccgcgGCAGCgacgCCCGAu -3'
miRNA:   3'- aCGCUUgUGUCGCGua--------CGUCG----GGGCU- -5'
12957 3' -57.7 NC_003387.1 + 966 0.66 0.520952
Target:  5'- gGCGggUAguuGUGUAUGCcGCCgCCGAg -3'
miRNA:   3'- aCGCuuGUgu-CGCGUACGuCGG-GGCU- -5'
12957 3' -57.7 NC_003387.1 + 1188 0.66 0.563698
Target:  5'- gGCGGGCGCAgGgGCAaggGUGGCCgUCGAc -3'
miRNA:   3'- aCGCUUGUGU-CgCGUa--CGUCGG-GGCU- -5'
12957 3' -57.7 NC_003387.1 + 1614 0.66 0.552911
Target:  5'- gGcCGGGCGC-GUGUggGCAGCCUCGc -3'
miRNA:   3'- aC-GCUUGUGuCGCGuaCGUCGGGGCu -5'
12957 3' -57.7 NC_003387.1 + 1922 0.66 0.552911
Target:  5'- cGCGGugAggucgaucgugCAGCGCAUGaucCGGCCgCGGg -3'
miRNA:   3'- aCGCUugU-----------GUCGCGUAC---GUCGGgGCU- -5'
12957 3' -57.7 NC_003387.1 + 2781 0.67 0.469425
Target:  5'- -uCGAGCACGGCGCGacguucgaggGCAaacccguuuGCCCCGu -3'
miRNA:   3'- acGCUUGUGUCGCGUa---------CGU---------CGGGGCu -5'
12957 3' -57.7 NC_003387.1 + 3822 0.71 0.279906
Target:  5'- cGCGAcaacgaucgucaGgGCGGCGCGguagGCGGCgCCGAc -3'
miRNA:   3'- aCGCU------------UgUGUCGCGUa---CGUCGgGGCU- -5'
12957 3' -57.7 NC_003387.1 + 4293 0.66 0.531531
Target:  5'- cGCGGGCgaGCAGCGCAccGCGa-CCCGGc -3'
miRNA:   3'- aCGCUUG--UGUCGCGUa-CGUcgGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 4630 0.7 0.317031
Target:  5'- cGCGGGCGCAGCG---GCAGCgCCa- -3'
miRNA:   3'- aCGCUUGUGUCGCguaCGUCGgGGcu -5'
12957 3' -57.7 NC_003387.1 + 4781 0.7 0.309319
Target:  5'- cGCGGcccACACGGCGuCGUGCccaugccuGCCgCCGAc -3'
miRNA:   3'- aCGCU---UGUGUCGC-GUACGu-------CGG-GGCU- -5'
12957 3' -57.7 NC_003387.1 + 5914 0.66 0.531531
Target:  5'- aGCGAgcuaACGCAGCGCG---GGCCgUCGAa -3'
miRNA:   3'- aCGCU----UGUGUCGCGUacgUCGG-GGCU- -5'
12957 3' -57.7 NC_003387.1 + 6382 0.73 0.194338
Target:  5'- cGCGGGCGacgccuuGCGUggGCGGCCCCGc -3'
miRNA:   3'- aCGCUUGUgu-----CGCGuaCGUCGGGGCu -5'
12957 3' -57.7 NC_003387.1 + 6665 0.66 0.542186
Target:  5'- cGCucaAGCGCGGUGCGcUGCAGauCCUCGAc -3'
miRNA:   3'- aCGc--UUGUGUCGCGU-ACGUC--GGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 6859 0.68 0.430144
Target:  5'- cGCGGcGCGCAGcCGCA-GCAGCUCgCGc -3'
miRNA:   3'- aCGCU-UGUGUC-GCGUaCGUCGGG-GCu -5'
12957 3' -57.7 NC_003387.1 + 7980 0.72 0.252761
Target:  5'- gGCGggUGCuGCGCuucgGC-GCCCCGGc -3'
miRNA:   3'- aCGCuuGUGuCGCGua--CGuCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 8114 0.67 0.469425
Target:  5'- gGCGAGCcCAGCucguacGCGcUGCuGUCCCGGc -3'
miRNA:   3'- aCGCUUGuGUCG------CGU-ACGuCGGGGCU- -5'
12957 3' -57.7 NC_003387.1 + 8190 0.66 0.520952
Target:  5'- -uCGAGCccuGCGGCGCcggGCGGCCCgGc -3'
miRNA:   3'- acGCUUG---UGUCGCGua-CGUCGGGgCu -5'
12957 3' -57.7 NC_003387.1 + 8262 0.68 0.420629
Target:  5'- cGCGGGCguGCAGCGCcucgcGCAGCgCCu- -3'
miRNA:   3'- aCGCUUG--UGUCGCGua---CGUCGgGGcu -5'
12957 3' -57.7 NC_003387.1 + 8294 0.67 0.496948
Target:  5'- gGCGAcguguggaucaccgGCGCGGCGCAUcacuaCGGCCCgGc -3'
miRNA:   3'- aCGCU--------------UGUGUCGCGUAc----GUCGGGgCu -5'
12957 3' -57.7 NC_003387.1 + 8314 0.75 0.148079
Target:  5'- cGCGAGCACAGCGU---CAGCCgCGGc -3'
miRNA:   3'- aCGCUUGUGUCGCGuacGUCGGgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.