Results 1 - 20 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12960 | 3' | -63.1 | NC_003387.1 | + | 36912 | 0.98 | 0.001239 |
Target: 5'- aCAACCGGCGGCGAC-GCGGCACCCCGc -3' miRNA: 3'- -GUUGGCCGCCGCUGuCGCCGUGGGGC- -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 11298 | 0.92 | 0.004082 |
Target: 5'- gCGACCGGCGGCGACAGCGGCAagCUCGg -3' miRNA: 3'- -GUUGGCCGCCGCUGUCGCCGUg-GGGC- -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 33699 | 0.81 | 0.02865 |
Target: 5'- gCGACCGGCGGUGugacGCAGUGGCuuagcucgcugGCCCCGu -3' miRNA: 3'- -GUUGGCCGCCGC----UGUCGCCG-----------UGGGGC- -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 18300 | 0.78 | 0.04235 |
Target: 5'- cCGAcCCGGCcGCGGCGGUGGCGCCCgGc -3' miRNA: 3'- -GUU-GGCCGcCGCUGUCGCCGUGGGgC- -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 1763 | 0.77 | 0.055875 |
Target: 5'- --cCCGGCGGCGGCGcUGGCGCCCg- -3' miRNA: 3'- guuGGCCGCCGCUGUcGCCGUGGGgc -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 51409 | 0.77 | 0.055875 |
Target: 5'- uGACCGGCGaGCGcCuGCGGCGCCgCCu -3' miRNA: 3'- gUUGGCCGC-CGCuGuCGCCGUGG-GGc -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 49189 | 0.77 | 0.059045 |
Target: 5'- gCAGCCgccuggGGCGGCGGCGGgGGCACUggcgCCGg -3' miRNA: 3'- -GUUGG------CCGCCGCUGUCgCCGUGG----GGC- -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 27918 | 0.76 | 0.067748 |
Target: 5'- uGACCGGCGGCGu--G-GGCGCCUCGg -3' miRNA: 3'- gUUGGCCGCCGCuguCgCCGUGGGGC- -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 9368 | 0.76 | 0.069631 |
Target: 5'- gAGCCGGUGGCGGCcgaGGCGacCCCCGa -3' miRNA: 3'- gUUGGCCGCCGCUGucgCCGU--GGGGC- -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 48204 | 0.76 | 0.069631 |
Target: 5'- -cACCGGCGGCGGCGGCcgaGGUGaCCCGc -3' miRNA: 3'- guUGGCCGCCGCUGUCG---CCGUgGGGC- -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 37174 | 0.75 | 0.07355 |
Target: 5'- -cACCGaGCuGGCGGCc-CGGCACCCCGa -3' miRNA: 3'- guUGGC-CG-CCGCUGucGCCGUGGGGC- -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 37346 | 0.75 | 0.076418 |
Target: 5'- -cGCCGcgggcugcgcuaucuGCGGCaccugucgGGCGGCGGCGCCCCGc -3' miRNA: 3'- guUGGC---------------CGCCG--------CUGUCGCCGUGGGGC- -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 34389 | 0.75 | 0.07961 |
Target: 5'- uGACCGGCGGgcaCGACGGCcacgccguugccgGGCGCCaCCGc -3' miRNA: 3'- gUUGGCCGCC---GCUGUCG-------------CCGUGG-GGC- -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 12226 | 0.75 | 0.079828 |
Target: 5'- -cACCGGCGGuCGccagcGCAGCGGCGCUCgGc -3' miRNA: 3'- guUGGCCGCC-GC-----UGUCGCCGUGGGgC- -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 49226 | 0.74 | 0.084294 |
Target: 5'- -uGCCGGUcgaGGCGGCcgAGCGGCugCUCGa -3' miRNA: 3'- guUGGCCG---CCGCUG--UCGCCGugGGGC- -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 14922 | 0.73 | 0.101871 |
Target: 5'- aCGGCUGcGCGGCuaccggcGCAGCGGCGcauCCCCGg -3' miRNA: 3'- -GUUGGC-CGCCGc------UGUCGCCGU---GGGGC- -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 24500 | 0.73 | 0.104649 |
Target: 5'- cCGACCGGCGGUucGuCAGCcGCAgCCCGu -3' miRNA: 3'- -GUUGGCCGCCG--CuGUCGcCGUgGGGC- -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 45841 | 0.73 | 0.108657 |
Target: 5'- gCAGCCGGUGccaCGACGGCgaccggcgucuuguuGGCGCCCUGa -3' miRNA: 3'- -GUUGGCCGCc--GCUGUCG---------------CCGUGGGGC- -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 5821 | 0.73 | 0.116485 |
Target: 5'- gCAACCccgcgcaaGGCGGCGGCGGCcucaaguccGGUGCCaCCGg -3' miRNA: 3'- -GUUGG--------CCGCCGCUGUCG---------CCGUGG-GGC- -5' |
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12960 | 3' | -63.1 | NC_003387.1 | + | 22169 | 0.72 | 0.119634 |
Target: 5'- -uACCGGCcGCGGCGGCGGUccaugucgggGCgCCCGu -3' miRNA: 3'- guUGGCCGcCGCUGUCGCCG----------UG-GGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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