miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12960 3' -63.1 NC_003387.1 + 36912 0.98 0.001239
Target:  5'- aCAACCGGCGGCGAC-GCGGCACCCCGc -3'
miRNA:   3'- -GUUGGCCGCCGCUGuCGCCGUGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 12234 0.72 0.12617
Target:  5'- --cCCGGCguGGCGAgAGCGuGCACCCg- -3'
miRNA:   3'- guuGGCCG--CCGCUgUCGC-CGUGGGgc -5'
12960 3' -63.1 NC_003387.1 + 18064 0.71 0.140243
Target:  5'- -cACCGGCGuuGccCAGCGGCACCCg- -3'
miRNA:   3'- guUGGCCGCcgCu-GUCGCCGUGGGgc -5'
12960 3' -63.1 NC_003387.1 + 50987 0.66 0.348702
Target:  5'- gCGGCCGGgGGCGuuuucguuugcuguGCAcGCGGCAUgCaCGc -3'
miRNA:   3'- -GUUGGCCgCCGC--------------UGU-CGCCGUGgG-GC- -5'
12960 3' -63.1 NC_003387.1 + 51409 0.77 0.055875
Target:  5'- uGACCGGCGaGCGcCuGCGGCGCCgCCu -3'
miRNA:   3'- gUUGGCCGC-CGCuGuCGCCGUGG-GGc -5'
12960 3' -63.1 NC_003387.1 + 1763 0.77 0.055875
Target:  5'- --cCCGGCGGCGGCGcUGGCGCCCg- -3'
miRNA:   3'- guuGGCCGCCGCUGUcGCCGUGGGgc -5'
12960 3' -63.1 NC_003387.1 + 48204 0.76 0.069631
Target:  5'- -cACCGGCGGCGGCGGCcgaGGUGaCCCGc -3'
miRNA:   3'- guUGGCCGCCGCUGUCG---CCGUgGGGC- -5'
12960 3' -63.1 NC_003387.1 + 37174 0.75 0.07355
Target:  5'- -cACCGaGCuGGCGGCc-CGGCACCCCGa -3'
miRNA:   3'- guUGGC-CG-CCGCUGucGCCGUGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 14922 0.73 0.101871
Target:  5'- aCGGCUGcGCGGCuaccggcGCAGCGGCGcauCCCCGg -3'
miRNA:   3'- -GUUGGC-CGCCGc------UGUCGCCGU---GGGGC- -5'
12960 3' -63.1 NC_003387.1 + 30439 0.72 0.12617
Target:  5'- aGGCCgaGGCGGUGGCcgAGCacGGCGCCCUGc -3'
miRNA:   3'- gUUGG--CCGCCGCUG--UCG--CCGUGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 5821 0.73 0.116485
Target:  5'- gCAACCccgcgcaaGGCGGCGGCGGCcucaaguccGGUGCCaCCGg -3'
miRNA:   3'- -GUUGG--------CCGCCGCUGUCG---------CCGUGG-GGC- -5'
12960 3' -63.1 NC_003387.1 + 49226 0.74 0.084294
Target:  5'- -uGCCGGUcgaGGCGGCcgAGCGGCugCUCGa -3'
miRNA:   3'- guUGGCCG---CCGCUG--UCGCCGugGGGC- -5'
12960 3' -63.1 NC_003387.1 + 11298 0.92 0.004082
Target:  5'- gCGACCGGCGGCGACAGCGGCAagCUCGg -3'
miRNA:   3'- -GUUGGCCGCCGCUGUCGCCGUg-GGGC- -5'
12960 3' -63.1 NC_003387.1 + 33753 0.72 0.119634
Target:  5'- --cCCGGCaagGGCaACGGCGGCGCCgCGa -3'
miRNA:   3'- guuGGCCG---CCGcUGUCGCCGUGGgGC- -5'
12960 3' -63.1 NC_003387.1 + 33699 0.81 0.02865
Target:  5'- gCGACCGGCGGUGugacGCAGUGGCuuagcucgcugGCCCCGu -3'
miRNA:   3'- -GUUGGCCGCCGC----UGUCGCCG-----------UGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 37346 0.75 0.076418
Target:  5'- -cGCCGcgggcugcgcuaucuGCGGCaccugucgGGCGGCGGCGCCCCGc -3'
miRNA:   3'- guUGGC---------------CGCCG--------CUGUCGCCGUGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 22065 0.72 0.12617
Target:  5'- -cACCGGCaccguuGGCGACGGCGGUAgCgCGu -3'
miRNA:   3'- guUGGCCG------CCGCUGUCGCCGUgGgGC- -5'
12960 3' -63.1 NC_003387.1 + 22921 0.72 0.136595
Target:  5'- gCGACCGaaauuaGCGGCGccggauacacgcGCAGCugaccgcguggGGCGCCCCGg -3'
miRNA:   3'- -GUUGGC------CGCCGC------------UGUCG-----------CCGUGGGGC- -5'
12960 3' -63.1 NC_003387.1 + 18300 0.78 0.04235
Target:  5'- cCGAcCCGGCcGCGGCGGUGGCGCCCgGc -3'
miRNA:   3'- -GUU-GGCCGcCGCUGUCGCCGUGGGgC- -5'
12960 3' -63.1 NC_003387.1 + 9368 0.76 0.069631
Target:  5'- gAGCCGGUGGCGGCcgaGGCGacCCCCGa -3'
miRNA:   3'- gUUGGCCGCCGCUGucgCCGU--GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.