miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12980 3' -54.8 NC_003387.1 + 18183 0.66 0.771933
Target:  5'- cGACGuCgUCGAGCGG-GUCGacgggCAGCCc -3'
miRNA:   3'- cUUGU-GgGGCUCGCCaCAGCa----GUUGG- -5'
12980 3' -54.8 NC_003387.1 + 18918 0.69 0.566492
Target:  5'- gGGAUGCCCUGcGCcucaucgGGUGUCGgcacCAGCCg -3'
miRNA:   3'- -CUUGUGGGGCuCG-------CCACAGCa---GUUGG- -5'
12980 3' -54.8 NC_003387.1 + 19136 0.72 0.396332
Target:  5'- cGAC-CCgaCCGGGCGGUGgcUCGUCGACg -3'
miRNA:   3'- cUUGuGG--GGCUCGCCAC--AGCAGUUGg -5'
12980 3' -54.8 NC_003387.1 + 20536 0.73 0.36105
Target:  5'- ---uGCCCCu-GCGGUGuUCGUCGGCUg -3'
miRNA:   3'- cuugUGGGGcuCGCCAC-AGCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 22038 0.66 0.720066
Target:  5'- cGACAUUCCGugGGCGGUGgCGgCGAUCa -3'
miRNA:   3'- cUUGUGGGGC--UCGCCACaGCaGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 22677 0.72 0.396332
Target:  5'- -cGCGCUCgUGGGCGGUGUCGaCGGCg -3'
miRNA:   3'- cuUGUGGG-GCUCGCCACAGCaGUUGg -5'
12980 3' -54.8 NC_003387.1 + 22966 0.66 0.761802
Target:  5'- gGGGCGCCCCG-GUcaucGUGUCGggCGgcGCCg -3'
miRNA:   3'- -CUUGUGGGGCuCGc---CACAGCa-GU--UGG- -5'
12980 3' -54.8 NC_003387.1 + 23019 0.68 0.600233
Target:  5'- uGGGCGCCgCCGAGCGcc-UCGaccUCGGCCa -3'
miRNA:   3'- -CUUGUGG-GGCUCGCcacAGC---AGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 23327 0.66 0.751537
Target:  5'- -uGCGCCCggCGGGCGaGaucgagGUCGUCAccggcGCCg -3'
miRNA:   3'- cuUGUGGG--GCUCGC-Ca-----CAGCAGU-----UGG- -5'
12980 3' -54.8 NC_003387.1 + 23904 0.66 0.741153
Target:  5'- -uGCGCgCCGAGgGGcugaacGUCGUCGAgCu -3'
miRNA:   3'- cuUGUGgGGCUCgCCa-----CAGCAGUUgG- -5'
12980 3' -54.8 NC_003387.1 + 24087 0.66 0.741153
Target:  5'- uGugACgCUGuGCGGUGUCGgCAucGCCu -3'
miRNA:   3'- cUugUGgGGCuCGCCACAGCaGU--UGG- -5'
12980 3' -54.8 NC_003387.1 + 24116 0.68 0.601327
Target:  5'- -cGCACCUCGAcgugcccguacgcgGCGGUguugagcuugagggcGUCGUCGACg -3'
miRNA:   3'- cuUGUGGGGCU--------------CGCCA---------------CAGCAGUUGg -5'
12980 3' -54.8 NC_003387.1 + 24498 0.68 0.655079
Target:  5'- ---gGCCgaCCG-GCGGU-UCGUCAGCCg -3'
miRNA:   3'- cuugUGG--GGCuCGCCAcAGCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 24876 0.67 0.666026
Target:  5'- ---gACCUCGGGCGGUGgcugcgcccUGUCcACCg -3'
miRNA:   3'- cuugUGGGGCUCGCCACa--------GCAGuUGG- -5'
12980 3' -54.8 NC_003387.1 + 25098 0.78 0.171795
Target:  5'- cGAACGCCagCCGGuCGGUGUCGUCGagGCCc -3'
miRNA:   3'- -CUUGUGG--GGCUcGCCACAGCAGU--UGG- -5'
12980 3' -54.8 NC_003387.1 + 25480 0.68 0.633134
Target:  5'- cGGGcCGCCUCGAccGCGcGUGUCagcucggccggGUCGACCg -3'
miRNA:   3'- -CUU-GUGGGGCU--CGC-CACAG-----------CAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 26565 0.71 0.443432
Target:  5'- uGACGCCCuugCGGGCGGUGcCGggCAugCu -3'
miRNA:   3'- cUUGUGGG---GCUCGCCACaGCa-GUugG- -5'
12980 3' -54.8 NC_003387.1 + 27052 0.68 0.644112
Target:  5'- -uACugCCCGAGCcgacGGUGUaaaUGUCGcCCu -3'
miRNA:   3'- cuUGugGGGCUCG----CCACA---GCAGUuGG- -5'
12980 3' -54.8 NC_003387.1 + 27800 0.72 0.424209
Target:  5'- uGAGCACCCCG-GCGGUGccCGaCGagaaguACCg -3'
miRNA:   3'- -CUUGUGGGGCuCGCCACa-GCaGU------UGG- -5'
12980 3' -54.8 NC_003387.1 + 27930 0.66 0.761801
Target:  5'- uGGGCGCCUCGGGgGGggcucgGUCGgggcgcUCGGCg -3'
miRNA:   3'- -CUUGUGGGGCUCgCCa-----CAGC------AGUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.