miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12980 3' -54.8 NC_003387.1 + 1301 0.7 0.503854
Target:  5'- cGACGCCCUG-GCGGgcgaCGUCGACg -3'
miRNA:   3'- cUUGUGGGGCuCGCCaca-GCAGUUGg -5'
12980 3' -54.8 NC_003387.1 + 1583 0.68 0.633134
Target:  5'- uAACGCCCUG-GCGGUcgacauGUCGcaCGGCCu -3'
miRNA:   3'- cUUGUGGGGCuCGCCA------CAGCa-GUUGG- -5'
12980 3' -54.8 NC_003387.1 + 1597 0.66 0.760781
Target:  5'- -cGCGCCcuggcauguucggCCGGGCGcGUGUgGgCAGCCu -3'
miRNA:   3'- cuUGUGG-------------GGCUCGC-CACAgCaGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 2208 0.67 0.708314
Target:  5'- gGggUGCCUCGugcucgccggucaGGCGGccagCGUCAGCCa -3'
miRNA:   3'- -CuuGUGGGGC-------------UCGCCaca-GCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 2332 0.67 0.67694
Target:  5'- -uACAgCUCG-GCGGUGUCGa-GGCCg -3'
miRNA:   3'- cuUGUgGGGCuCGCCACAGCagUUGG- -5'
12980 3' -54.8 NC_003387.1 + 4182 0.68 0.633134
Target:  5'- cGugACCUCGGcGCGGUG-CuUCGGCCa -3'
miRNA:   3'- cUugUGGGGCU-CGCCACaGcAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 4465 0.66 0.751537
Target:  5'- aGAACAgCCCGAGCuGcUGgccgCGgcCGACCg -3'
miRNA:   3'- -CUUGUgGGGCUCGcC-ACa---GCa-GUUGG- -5'
12980 3' -54.8 NC_003387.1 + 5338 0.69 0.589308
Target:  5'- ---uGCCCCGcgcuuGCGGUGUCGguguugagcugUCAACa -3'
miRNA:   3'- cuugUGGGGCu----CGCCACAGC-----------AGUUGg -5'
12980 3' -54.8 NC_003387.1 + 6627 0.66 0.726432
Target:  5'- gGAACAUgUCG-GCGGccgucuugggcucGUCGUCGACCc -3'
miRNA:   3'- -CUUGUGgGGCuCGCCa------------CAGCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 7836 0.69 0.546047
Target:  5'- -uGCGCgCCCG-GCGGcUG-CGUCAGCUc -3'
miRNA:   3'- cuUGUG-GGGCuCGCC-ACaGCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 9020 0.66 0.741152
Target:  5'- cGAGCACCUggCGGGCGccGUCGgCGAUCc -3'
miRNA:   3'- -CUUGUGGG--GCUCGCcaCAGCaGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 10041 0.69 0.578419
Target:  5'- aAGCGCgCCGAgggcGCGGUGUCG---GCCg -3'
miRNA:   3'- cUUGUGgGGCU----CGCCACAGCaguUGG- -5'
12980 3' -54.8 NC_003387.1 + 11418 0.66 0.751538
Target:  5'- ---gGCCCCGAgGUGcUGUCGUCGguGCUc -3'
miRNA:   3'- cuugUGGGGCU-CGCcACAGCAGU--UGG- -5'
12980 3' -54.8 NC_003387.1 + 11492 0.74 0.32722
Target:  5'- cAAUGCCUCGugGGCGGUGccuacgaUCGUCGGCCu -3'
miRNA:   3'- cUUGUGGGGC--UCGCCAC-------AGCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 12713 0.67 0.687812
Target:  5'- cGAGCGCCCgCGGGgcucuaGGUGcCGUCGuagaACUg -3'
miRNA:   3'- -CUUGUGGG-GCUCg-----CCACaGCAGU----UGG- -5'
12980 3' -54.8 NC_003387.1 + 13644 0.7 0.493522
Target:  5'- cGAACGgCCCGAccGCGacGUgGUCAACCg -3'
miRNA:   3'- -CUUGUgGGGCU--CGCcaCAgCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 15833 0.67 0.666025
Target:  5'- uGugACgCCGAcGCGGUGccCGUCGGCg -3'
miRNA:   3'- cUugUGgGGCU-CGCCACa-GCAGUUGg -5'
12980 3' -54.8 NC_003387.1 + 17005 0.67 0.698631
Target:  5'- ---gACCCCGAGCGGg--CGcUAAUCa -3'
miRNA:   3'- cuugUGGGGCUCGCCacaGCaGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 17574 0.68 0.655079
Target:  5'- --cCGCCCUc-GCuGGUGUCGUgCGGCCa -3'
miRNA:   3'- cuuGUGGGGcuCG-CCACAGCA-GUUGG- -5'
12980 3' -54.8 NC_003387.1 + 18142 0.66 0.719002
Target:  5'- cGGGCACCUCaaGGCGGUuggcaucgaguucGaCGUCGACCc -3'
miRNA:   3'- -CUUGUGGGGc-UCGCCA-------------CaGCAGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.