miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12980 3' -54.8 NC_003387.1 + 43019 1.11 0.000824
Target:  5'- uGAACACCCCGAGCGGUGUCGUCAACCu -3'
miRNA:   3'- -CUUGUGGGGCUCGCCACAGCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 25098 0.78 0.171795
Target:  5'- cGAACGCCagCCGGuCGGUGUCGUCGagGCCc -3'
miRNA:   3'- -CUUGUGG--GGCUcGCCACAGCAGU--UGG- -5'
12980 3' -54.8 NC_003387.1 + 11492 0.74 0.32722
Target:  5'- cAAUGCCUCGugGGCGGUGccuacgaUCGUCGGCCu -3'
miRNA:   3'- cUUGUGGGGC--UCGCCAC-------AGCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 20536 0.73 0.36105
Target:  5'- ---uGCCCCu-GCGGUGuUCGUCGGCUg -3'
miRNA:   3'- cuugUGGGGcuCGCCAC-AGCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 36330 0.72 0.378415
Target:  5'- uGAACGCCaucAGC-GUGUCGUCGGCCu -3'
miRNA:   3'- -CUUGUGGggcUCGcCACAGCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 45875 0.72 0.396332
Target:  5'- uGGCGCCCUGAGCGGUcgCGcUCAcACCc -3'
miRNA:   3'- cUUGUGGGGCUCGCCAcaGC-AGU-UGG- -5'
12980 3' -54.8 NC_003387.1 + 22677 0.72 0.396332
Target:  5'- -cGCGCUCgUGGGCGGUGUCGaCGGCg -3'
miRNA:   3'- cuUGUGGG-GCUCGCCACAGCaGUUGg -5'
12980 3' -54.8 NC_003387.1 + 19136 0.72 0.396332
Target:  5'- cGAC-CCgaCCGGGCGGUGgcUCGUCGACg -3'
miRNA:   3'- cUUGuGG--GGCUCGCCAC--AGCAGUUGg -5'
12980 3' -54.8 NC_003387.1 + 27800 0.72 0.424209
Target:  5'- uGAGCACCCCG-GCGGUGccCGaCGagaaguACCg -3'
miRNA:   3'- -CUUGUGGGGCuCGCCACa-GCaGU------UGG- -5'
12980 3' -54.8 NC_003387.1 + 26565 0.71 0.443432
Target:  5'- uGACGCCCuugCGGGCGGUGcCGggCAugCu -3'
miRNA:   3'- cUUGUGGG---GCUCGCCACaGCa-GUugG- -5'
12980 3' -54.8 NC_003387.1 + 38590 0.71 0.463136
Target:  5'- cGACACCCUGAGCgugccGGUGaUCGaggcgcuguUCGGCCc -3'
miRNA:   3'- cUUGUGGGGCUCG-----CCAC-AGC---------AGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 31329 0.71 0.463136
Target:  5'- aAGCACUgCGgcaaggcucuuGGCGGUGUCGUCGucuggcACCu -3'
miRNA:   3'- cUUGUGGgGC-----------UCGCCACAGCAGU------UGG- -5'
12980 3' -54.8 NC_003387.1 + 46648 0.71 0.473158
Target:  5'- cGACGCCCCG-GCGG--UCGUCAuggugcgcucgaACCu -3'
miRNA:   3'- cUUGUGGGGCuCGCCacAGCAGU------------UGG- -5'
12980 3' -54.8 NC_003387.1 + 38045 0.71 0.474166
Target:  5'- cGGCGCCCCGAucggGCGGUGgcugagcgagcgccgCGUCAcugugcgcggcgGCCu -3'
miRNA:   3'- cUUGUGGGGCU----CGCCACa--------------GCAGU------------UGG- -5'
12980 3' -54.8 NC_003387.1 + 13644 0.7 0.493522
Target:  5'- cGAACGgCCCGAccGCGacGUgGUCAACCg -3'
miRNA:   3'- -CUUGUgGGGCU--CGCcaCAgCAGUUGG- -5'
12980 3' -54.8 NC_003387.1 + 1301 0.7 0.503854
Target:  5'- cGACGCCCUG-GCGGgcgaCGUCGACg -3'
miRNA:   3'- cUUGUGGGGCuCGCCaca-GCAGUUGg -5'
12980 3' -54.8 NC_003387.1 + 49646 0.7 0.514279
Target:  5'- cGAGCuugGCCCCGAGUGGgucgacGUCGgagCggUCg -3'
miRNA:   3'- -CUUG---UGGGGCUCGCCa-----CAGCa--GuuGG- -5'
12980 3' -54.8 NC_003387.1 + 44628 0.7 0.52479
Target:  5'- --uCGCCCuCGGGCGG-GUUGgcgcCGACCg -3'
miRNA:   3'- cuuGUGGG-GCUCGCCaCAGCa---GUUGG- -5'
12980 3' -54.8 NC_003387.1 + 51837 0.7 0.535381
Target:  5'- cGAGCGCgCCGAGCaGGUa-CGUCuuGCCg -3'
miRNA:   3'- -CUUGUGgGGCUCG-CCAcaGCAGu-UGG- -5'
12980 3' -54.8 NC_003387.1 + 7836 0.69 0.546047
Target:  5'- -uGCGCgCCCG-GCGGcUG-CGUCAGCUc -3'
miRNA:   3'- cuUGUG-GGGCuCGCC-ACaGCAGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.