Results 1 - 20 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12980 | 5' | -63.2 | NC_003387.1 | + | 43055 | 1.1 | 0.000169 |
Target: 5'- gCGAGCUGACCCCGCACCGCCCCGAGGg -3' miRNA: 3'- -GCUCGACUGGGGCGUGGCGGGGCUCC- -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 32242 | 0.8 | 0.033245 |
Target: 5'- aCGAGCUGGCCgaCCGCcugGCCGUCgCCGAGGc -3' miRNA: 3'- -GCUCGACUGG--GGCG---UGGCGG-GGCUCC- -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 47403 | 0.76 | 0.07368 |
Target: 5'- gGGGCaaccGGCCCCGCcCCGagCCCGAGGa -3' miRNA: 3'- gCUCGa---CUGGGGCGuGGCg-GGGCUCC- -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 22456 | 0.74 | 0.104513 |
Target: 5'- aCGAGUggcugcccGACCCCgGCGCCGaCCCCGAc- -3' miRNA: 3'- -GCUCGa-------CUGGGG-CGUGGC-GGGGCUcc -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 5121 | 0.73 | 0.116227 |
Target: 5'- gCGAGCUGAUCgCCGCA-CGCgaCGAGGg -3' miRNA: 3'- -GCUCGACUGG-GGCGUgGCGggGCUCC- -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 26893 | 0.72 | 0.125474 |
Target: 5'- cCGAGCaGGCCaCCGCccagGCCGCCgagcaggccgccaCCGAGGc -3' miRNA: 3'- -GCUCGaCUGG-GGCG----UGGCGG-------------GGCUCC- -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 24781 | 0.72 | 0.129157 |
Target: 5'- cCGAGCgccccGACCgaGC-CCGcCCCCGAGGc -3' miRNA: 3'- -GCUCGa----CUGGggCGuGGC-GGGGCUCC- -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 25179 | 0.72 | 0.129157 |
Target: 5'- gCGcGgUGGCCCCgGCGCCGCCgCCGcGGc -3' miRNA: 3'- -GCuCgACUGGGG-CGUGGCGG-GGCuCC- -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 107 | 0.72 | 0.132591 |
Target: 5'- cCGAGCUGAUgCgCGC-CCGCCUCGAu- -3' miRNA: 3'- -GCUCGACUGgG-GCGuGGCGGGGCUcc -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 26144 | 0.72 | 0.132591 |
Target: 5'- aCGAGCcagcauGCCCgGCACCGCCCgCaAGGg -3' miRNA: 3'- -GCUCGac----UGGGgCGUGGCGGG-GcUCC- -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 33897 | 0.71 | 0.157849 |
Target: 5'- uGGGCggcGACCCgucggcgaucugcgCGCaaACCGCCCCGAGc -3' miRNA: 3'- gCUCGa--CUGGG--------------GCG--UGGCGGGGCUCc -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 6956 | 0.71 | 0.163228 |
Target: 5'- aGGGC--ACCCUGCugGCCGCCCucguCGAGGg -3' miRNA: 3'- gCUCGacUGGGGCG--UGGCGGG----GCUCC- -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 48131 | 0.71 | 0.167478 |
Target: 5'- aCGuGGCaGACCCgCGCGCagcgCGCCaCCGAGGc -3' miRNA: 3'- -GC-UCGaCUGGG-GCGUG----GCGG-GGCUCC- -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 8061 | 0.71 | 0.171388 |
Target: 5'- aCGAGCUGGCggCCCGCGCUaacccgcugccgGUcggcgccaacccgCCCGAGGg -3' miRNA: 3'- -GCUCGACUG--GGGCGUGG------------CG-------------GGGCUCC- -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 23888 | 0.71 | 0.171827 |
Target: 5'- -uGGCUGGCCgacgUGCugCGCgCCGAGGg -3' miRNA: 3'- gcUCGACUGGg---GCGugGCGgGGCUCC- -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 35591 | 0.7 | 0.185483 |
Target: 5'- cCGAGCUGGUCgacacagcgaUCGCcuACgGCCCCGAGGa -3' miRNA: 3'- -GCUCGACUGG----------GGCG--UGgCGGGGCUCC- -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 9536 | 0.7 | 0.185483 |
Target: 5'- -aAGCgGugCCUGCgcaaGCCGCCgCCGGGGu -3' miRNA: 3'- gcUCGaCugGGGCG----UGGCGG-GGCUCC- -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 48523 | 0.7 | 0.190244 |
Target: 5'- uGGGCcgacacgcggUGGCCgaaGCACCGCgCCGAGGu -3' miRNA: 3'- gCUCG----------ACUGGgg-CGUGGCGgGGCUCC- -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 11404 | 0.7 | 0.195112 |
Target: 5'- --cGCUGGCCgCG-AUCgGCCCCGAGGu -3' miRNA: 3'- gcuCGACUGGgGCgUGG-CGGGGCUCC- -5' |
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12980 | 5' | -63.2 | NC_003387.1 | + | 39006 | 0.7 | 0.195112 |
Target: 5'- -aGGCUGaucGCCCUGCGCCGCCUgGGc- -3' miRNA: 3'- gcUCGAC---UGGGGCGUGGCGGGgCUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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