miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12980 5' -63.2 NC_003387.1 + 43055 1.1 0.000169
Target:  5'- gCGAGCUGACCCCGCACCGCCCCGAGGg -3'
miRNA:   3'- -GCUCGACUGGGGCGUGGCGGGGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 2010 0.7 0.197089
Target:  5'- uGAcGCUGGCCCUGCucggugccgccgacgGCCGCCgucgCCGAGc -3'
miRNA:   3'- gCU-CGACUGGGGCG---------------UGGCGG----GGCUCc -5'
12980 5' -63.2 NC_003387.1 + 41264 0.69 0.205175
Target:  5'- uGAcGCUGACCgUGCGCCcCCUCGAcGGc -3'
miRNA:   3'- gCU-CGACUGGgGCGUGGcGGGGCU-CC- -5'
12980 5' -63.2 NC_003387.1 + 27917 0.66 0.36253
Target:  5'- cCGAGCUG-CUgCGCcaggucgGCCGCgaCCCGAGcGg -3'
miRNA:   3'- -GCUCGACuGGgGCG-------UGGCG--GGGCUC-C- -5'
12980 5' -63.2 NC_003387.1 + 5121 0.73 0.116227
Target:  5'- gCGAGCUGAUCgCCGCA-CGCgaCGAGGg -3'
miRNA:   3'- -GCUCGACUGG-GGCGUgGCGggGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 25179 0.72 0.129157
Target:  5'- gCGcGgUGGCCCCgGCGCCGCCgCCGcGGc -3'
miRNA:   3'- -GCuCgACUGGGG-CGUGGCGG-GGCuCC- -5'
12980 5' -63.2 NC_003387.1 + 107 0.72 0.132591
Target:  5'- cCGAGCUGAUgCgCGC-CCGCCUCGAu- -3'
miRNA:   3'- -GCUCGACUGgG-GCGuGGCGGGGCUcc -5'
12980 5' -63.2 NC_003387.1 + 33897 0.71 0.157849
Target:  5'- uGGGCggcGACCCgucggcgaucugcgCGCaaACCGCCCCGAGc -3'
miRNA:   3'- gCUCGa--CUGGG--------------GCG--UGGCGGGGCUCc -5'
12980 5' -63.2 NC_003387.1 + 8061 0.71 0.171388
Target:  5'- aCGAGCUGGCggCCCGCGCUaacccgcugccgGUcggcgccaacccgCCCGAGGg -3'
miRNA:   3'- -GCUCGACUG--GGGCGUGG------------CG-------------GGGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 11404 0.7 0.195112
Target:  5'- --cGCUGGCCgCG-AUCgGCCCCGAGGu -3'
miRNA:   3'- gcuCGACUGGgGCgUGG-CGGGGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 9536 0.7 0.185483
Target:  5'- -aAGCgGugCCUGCgcaaGCCGCCgCCGGGGu -3'
miRNA:   3'- gcUCGaCugGGGCG----UGGCGG-GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 48131 0.71 0.167478
Target:  5'- aCGuGGCaGACCCgCGCGCagcgCGCCaCCGAGGc -3'
miRNA:   3'- -GC-UCGaCUGGG-GCGUG----GCGG-GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 32242 0.8 0.033245
Target:  5'- aCGAGCUGGCCgaCCGCcugGCCGUCgCCGAGGc -3'
miRNA:   3'- -GCUCGACUGG--GGCG---UGGCGG-GGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 35591 0.7 0.185483
Target:  5'- cCGAGCUGGUCgacacagcgaUCGCcuACgGCCCCGAGGa -3'
miRNA:   3'- -GCUCGACUGG----------GGCG--UGgCGGGGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 47403 0.76 0.07368
Target:  5'- gGGGCaaccGGCCCCGCcCCGagCCCGAGGa -3'
miRNA:   3'- gCUCGa---CUGGGGCGuGGCg-GGGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 6956 0.71 0.163228
Target:  5'- aGGGC--ACCCUGCugGCCGCCCucguCGAGGg -3'
miRNA:   3'- gCUCGacUGGGGCG--UGGCGGG----GCUCC- -5'
12980 5' -63.2 NC_003387.1 + 48523 0.7 0.190244
Target:  5'- uGGGCcgacacgcggUGGCCgaaGCACCGCgCCGAGGu -3'
miRNA:   3'- gCUCG----------ACUGGgg-CGUGGCGgGGCUCC- -5'
12980 5' -63.2 NC_003387.1 + 41447 0.7 0.200088
Target:  5'- cCGGcGC-GGCCCUGaCGCCGCCCUGAc- -3'
miRNA:   3'- -GCU-CGaCUGGGGC-GUGGCGGGGCUcc -5'
12980 5' -63.2 NC_003387.1 + 22456 0.74 0.104513
Target:  5'- aCGAGUggcugcccGACCCCgGCGCCGaCCCCGAc- -3'
miRNA:   3'- -GCUCGa-------CUGGGG-CGUGGC-GGGGCUcc -5'
12980 5' -63.2 NC_003387.1 + 24781 0.72 0.129157
Target:  5'- cCGAGCgccccGACCgaGC-CCGcCCCCGAGGc -3'
miRNA:   3'- -GCUCGa----CUGGggCGuGGC-GGGGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.