miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12984 3' -63.2 NC_003387.1 + 44977 1.09 0.00018
Target:  5'- cGCGAUCGCCGCUGCCGCCGAGGCGGUg -3'
miRNA:   3'- -CGCUAGCGGCGACGGCGGCUCCGCCA- -5'
12984 3' -63.2 NC_003387.1 + 52264 0.82 0.022257
Target:  5'- cCGGUCGCCGUcgGCCGCCGcGGCGGc -3'
miRNA:   3'- cGCUAGCGGCGa-CGGCGGCuCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 35607 0.8 0.032044
Target:  5'- aGCGAUCGCCuacggccccgaGgaGcCCGCCGAGGCGGc -3'
miRNA:   3'- -CGCUAGCGG-----------CgaC-GGCGGCUCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 28436 0.8 0.032044
Target:  5'- cGUGAUCGgCGC-GCaCGCCGAGGCGGc -3'
miRNA:   3'- -CGCUAGCgGCGaCG-GCGGCUCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 34518 0.77 0.052871
Target:  5'- cCGGUCGUCGC-GUCGCCGAGGCGc- -3'
miRNA:   3'- cGCUAGCGGCGaCGGCGGCUCCGCca -5'
12984 3' -63.2 NC_003387.1 + 24169 0.76 0.060194
Target:  5'- gGCGAUCGCCGCcucggucgcccaauUGUCGCCG-GGCuuGGUg -3'
miRNA:   3'- -CGCUAGCGGCG--------------ACGGCGGCuCCG--CCA- -5'
12984 3' -63.2 NC_003387.1 + 31024 0.76 0.067748
Target:  5'- cGCGG--GCCGC-GCuCGCCGAGGCGGc -3'
miRNA:   3'- -CGCUagCGGCGaCG-GCGGCUCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 30176 0.74 0.086616
Target:  5'- cGCGAUCGCCucgggcaaggaGCaGUCGCCGAGcCGGUa -3'
miRNA:   3'- -CGCUAGCGG-----------CGaCGGCGGCUCcGCCA- -5'
12984 3' -63.2 NC_003387.1 + 33460 0.74 0.091442
Target:  5'- cGCGcaaggCgGCCGaaGUCGCCGAGGCGGUc -3'
miRNA:   3'- -CGCua---G-CGGCgaCGGCGGCUCCGCCA- -5'
12984 3' -63.2 NC_003387.1 + 48788 0.74 0.09395
Target:  5'- aGC--UCGCCGCUGaUCGCCGcGGCGGc -3'
miRNA:   3'- -CGcuAGCGGCGAC-GGCGGCuCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 9537 0.74 0.096524
Target:  5'- aGCGGU-GCCuGCgcaagccGCCGCCGGGGUGGa -3'
miRNA:   3'- -CGCUAgCGG-CGa------CGGCGGCUCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 17072 0.72 0.115556
Target:  5'- cGCGGUCGaggucggccagugcCCGCccgGCCGCCucGGCGGg -3'
miRNA:   3'- -CGCUAGC--------------GGCGa--CGGCGGcuCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 41056 0.72 0.125169
Target:  5'- cGCGAUCGCCGagGCCGCUgucgacgcgaucgaGGGGCGa- -3'
miRNA:   3'- -CGCUAGCGGCgaCGGCGG--------------CUCCGCca -5'
12984 3' -63.2 NC_003387.1 + 23284 0.72 0.12617
Target:  5'- cGCGAggauagCGaCCGCgcggGCCGCUGcGGCGGc -3'
miRNA:   3'- -CGCUa-----GC-GGCGa---CGGCGGCuCCGCCa -5'
12984 3' -63.2 NC_003387.1 + 15807 0.72 0.13094
Target:  5'- aGCGGggUGCCGCUGUcgccgccgguugugaCGCCGAcGCGGUg -3'
miRNA:   3'- -CGCUa-GCGGCGACG---------------GCGGCUcCGCCA- -5'
12984 3' -63.2 NC_003387.1 + 30605 0.72 0.133035
Target:  5'- uCGuAUUGCCGCcaggGCCGCCGGGGaUGGc -3'
miRNA:   3'- cGC-UAGCGGCGa---CGGCGGCUCC-GCCa -5'
12984 3' -63.2 NC_003387.1 + 4513 0.72 0.133035
Target:  5'- uGCGGgucaccUCgGCCGCcGCCGCCGGuGCGGg -3'
miRNA:   3'- -CGCU------AG-CGGCGaCGGCGGCUcCGCCa -5'
12984 3' -63.2 NC_003387.1 + 132 0.71 0.136595
Target:  5'- uGCGGUCGCCcucGCgauccgcGCCGCCGAGcUGGg -3'
miRNA:   3'- -CGCUAGCGG---CGa------CGGCGGCUCcGCCa -5'
12984 3' -63.2 NC_003387.1 + 18967 0.71 0.140243
Target:  5'- cGCGGcgcCGCCGUUGCCcuuGCCGGGGUGc- -3'
miRNA:   3'- -CGCUa--GCGGCGACGG---CGGCUCCGCca -5'
12984 3' -63.2 NC_003387.1 + 4403 0.71 0.14398
Target:  5'- cGCGcUCGCgCGCcGCCucgauuucGUCGAGGCGGg -3'
miRNA:   3'- -CGCuAGCG-GCGaCGG--------CGGCUCCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.